View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20347_low_17 (Length: 312)

Name: NF20347_low_17
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20347_low_17
NF20347_low_17
[»] chr4 (13 HSPs)
chr4 (17-308)||(38058547-38058838)
chr4 (17-308)||(38061616-38061907)
chr4 (110-308)||(38086385-38086583)
chr4 (17-308)||(38072875-38073172)
chr4 (109-308)||(38081960-38082159)
chr4 (134-298)||(37954219-37954383)
chr4 (224-294)||(38090795-38090865)
chr4 (217-294)||(36080187-36080264)
chr4 (248-298)||(38125625-38125675)
chr4 (248-294)||(38129582-38129628)
chr4 (230-294)||(34971530-34971594)
chr4 (230-294)||(36108051-36108115)
chr4 (19-59)||(38077992-38078032)
[»] chr6 (3 HSPs)
chr6 (151-286)||(7001406-7001541)
chr6 (69-180)||(10792936-10793050)
chr6 (248-287)||(10792884-10792923)
[»] chr1 (2 HSPs)
chr1 (69-180)||(34268585-34268699)
chr1 (248-287)||(34268712-34268751)
[»] chr2 (3 HSPs)
chr2 (208-285)||(11786982-11787059)
chr2 (230-294)||(8338676-8338740)
chr2 (248-298)||(11811316-11811366)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 38058838 - 38058547
Alignment:
Q  17 agaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttgaatttactctttgtaagataacagtaatttctaagttttcat 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38058838 agaaacaaggcttgaaatatagcttgtactgttgattttgacttcccctttatacttgaatttaccctttgtaagataacagtaatttctaagttttcat 38058739  T
Q  117 caattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactgg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  38058738 caattctacttgtcaaaaactgccacttgtgaataagctttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttg 38058639  T
Q  217 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgcttctc 308  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38058638 aacaagtttaatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctc 38058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 38061616 - 38061907
Alignment:
Q  17 agaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttgaatttactctttgtaagataacagtaatttctaagttttcat 116  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| || ||| ||||| ||||||| ||||| |||||||||  |||  ||| ||||||||    
T  38061616 agaaacaaggcttgaaataaagcttgtactgttgaatttgacttaccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcat 38061715  T
Q  117 caattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactgg 216  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| || |||| |||| ||||||||||| |    
T  38061716 caattgtacttgtcacaaactgccacttgtgaacaagctttgttgcattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttg 38061815  T
Q  217 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgcttctc 308  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  38061816 aacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctc 38061907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 110 - 308
Target Start/End: Complemental strand, 38086583 - 38086385
Alignment:
Q  110 ttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatg 209  Q
    |||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  38086583 ttttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactgtcacaattgatg 38086484  T
Q  210 gaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgcttctc 308  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||    
T  38086483 gaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctc 38086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 38073172 - 38072875
Alignment:
Q  17 agaaacaaggcttgaaatatagcttgtactgttgactttgacttcccctttatacttgaattta---ct---ctttgtaagataacagtaatttctaagt 110  Q
    |||||||||| |||||||| |||| ||||||||||||||| ||  || | | ||||||||||||   ||   ||||| ||||||| | ||||  ||||||    
T  38073172 agaaacaaggattgaaataaagctagtactgttgactttggctcaccttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagt 38073073  T
Q  111 tttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatgg 210  Q
    |||| |||| | ||   |  | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||| || || ||| |||||||    
T  38073072 tttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatgg 38072973  T
Q  211 aactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgcttctc 308  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38072972 aacttgaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctc 38072875  T

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Target: chr4; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 38082159 - 38081960
Alignment:
Q  109 gttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgat 208  Q
    ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||  |||| || |||||  ||| |    
T  38082159 gttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgct 38082060  T
Q  209 ggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccctttgcttctc 308  Q
    ||||||  ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  38082059 ggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaaataatcttcacccattgcttctc 38081960  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 37954383 - 37954219
Alignment:
Q  134 aactgccacttgtgaataagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttcc 233  Q
    ||||||||||| ||||||||||| ||||| || ||||||| |||  | | |||  | || | ||||||| ||||||||||  |||| ||||| | |||||    
T  37954383 aactgccacttctgaataagcttggttgcgttatgttccagtgtcctagaaactctgaatattgtcacagttgatggaacatgaactagttttaccttcc 37954284  T
Q  234 atgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 298  Q
    |||  |  || || ||||| |||||||||||||| ||||||||||||||||||| ||| ||||||    
T  37954283 atgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcaccc 37954219  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 38090865 - 38090795
Alignment:
Q  224 ttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||| | ||||||    
T  38090865 ttaatcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaaaacatcttc 38090795  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 36080264 - 36080187
Alignment:
Q  217 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| ||||||||    
T  36080264 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaataaatcttc 36080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 38125675 - 38125625
Alignment:
Q  248 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 298  Q
    |||||||||||||||||||| ||||||||||||||||| |  |||||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaaaagttcttcaccc 38125625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 38129628 - 38129582
Alignment:
Q  248 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaaaagatcttc 38129582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 34971530 - 34971594
Alignment:
Q  230 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  34971530 ttccatgaaagaataacaccaaaactagcaccaccaccacctctgatagcccaaaagagatcttc 34971594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 36108115 - 36108051
Alignment:
Q  230 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    ||||||||||  || ||||||||||| || || ||||||||||| ||||||||||| | ||||||    
T  36108115 ttccatgaaagaataacaccaaaactagcaccaccaccacctcttatagcccaaaaaagatcttc 36108051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 38078032 - 38077992
Alignment:
Q  19 aaacaaggcttgaaatatagcttgtactgttgactttgact 59  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  38078032 aaacaaggcttaaaataaagctagtactgttgactttgact 38077992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 286
Target Start/End: Original strand, 7001406 - 7001541
Alignment:
Q  151 aagctttgttgcattttgttccaatgtttttggaacattaaagactgtcacaattgatggaactggaacaagtttaatcttccatgaaactatgacacca 250  Q
    |||||||||||||||||| |||||||||||||| | ||| || ||||||| | || ||||||||  || |||||||||||||||||||| |||||| |||    
T  7001406 aagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcca 7001505  T
Q  251 aaacttgctcctccaccacctctaatagcccaaaac 286  Q
    ||||||||||||||| ||||||||||||| ||||||    
T  7001506 aaacttgctcctccagcacctctaatagctcaaaac 7001541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 10793050 - 10792936
Alignment:
Q  69 tacttgaatttactctttgtaagataacag---taatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcatt 165  Q
    ||||||||||||| ||| | |||||||||    ||||  ||| |||| |||||||| ||||||||| || |||||| ||||||| ||| |||||||||||    
T  10793050 tacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcatt 10792951  T
Q  166 ttgttccaatgtttt 180  Q
    ||| |||||||||||    
T  10792950 ttgatccaatgtttt 10792936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 10792923 - 10792884
Alignment:
Q  248 ccaaaacttgctcctccaccacctctaatagcccaaaaca 287  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  10792923 ccaaaacttgctcctccacctcctctaatagctcaaaaca 10792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 34268585 - 34268699
Alignment:
Q  69 tacttgaatttactctttgtaagataacag---taatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcatt 165  Q
    ||||||||||||| ||| | |||||||||    ||||  ||| |||| |||||||| ||||||||| || |||||| ||||||| ||| |||||||||||    
T  34268585 tacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcatt 34268684  T
Q  166 ttgttccaatgtttt 180  Q
    ||| |||||||||||    
T  34268685 ttgatccaatgtttt 34268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 34268712 - 34268751
Alignment:
Q  248 ccaaaacttgctcctccaccacctctaatagcccaaaaca 287  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  34268712 ccaaaacttgctcctccacctcctctaatagctcaaaaca 34268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 11786982 - 11787059
Alignment:
Q  208 tggaactggaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaa 285  Q
    |||||| ||||||||||| ||||||||  |||  |  | |||||||||| | ||||||||||||||||||||||||||    
T  11786982 tggaacaggaacaagttttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaa 11787059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 8338740 - 8338676
Alignment:
Q  230 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttc 294  Q
    ||||||||||  || ||||||||||| || || |||||||| |||||||||||||||| ||||||    
T  8338740 ttccatgaaagaataacaccaaaactagcaccaccaccacccctaatagcccaaaacagatcttc 8338676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 11811316 - 11811366
Alignment:
Q  248 ccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcaccc 298  Q
    ||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||    
T  11811316 ccaaagcttgatcctccacctcctcttatagcccaaaataaatcttcaccc 11811366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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