View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20347_low_19 (Length: 297)
Name: NF20347_low_19
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 104 - 279
Target Start/End: Complemental strand, 49746626 - 49746454
Alignment:
| Q |
104 |
aatagttagaacttttagttatttaaacaatatctctt-gaaaacatttgttagcannnnnnncttcgacggtgcaactcttaccaacttcagttatgct |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
49746626 |
aatagttagaatttttagttatttaaacaatatctctttgaaaacatttgttagcatttttttcttcgacggtgcaact----------tcagttatgct |
49746537 |
T |
|
| Q |
203 |
ttaaaaaccgacttggtgattgacgatataagagta------gagattctctaataaagaaaccaactccttaccgtagctat |
279 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49746536 |
ttaaaaaccaacttggtgattgacgatataagagtaagagtagagattctctaataaagaaaccaactccttaccgtagctat |
49746454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University