View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_2 (Length: 689)
Name: NF20347_low_2
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 33116765 - 33117137
Alignment:
| Q |
1 |
attggctctctatatactgttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggtatagaggagtctgtgga |
100 |
Q |
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| T |
33116765 |
attggctctctatatactgttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtgga |
33116864 |
T |
|
| Q |
101 |
ggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116865 |
ggaatggcttcaacaagtgtttggatctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgcatggacattcatgttgt |
33116964 |
T |
|
| Q |
201 |
ttggaattgttgctgtcatagcaattttctttgtcctcgttttcgtacctgaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaag |
300 |
Q |
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| T |
33116965 |
ttggaattgttgctgtcatagcaagttcctttgtcctcgttttcgtaccagaaaccaaaggtgttccaattgaggaagtggagaagatgcttcaacaaag |
33117064 |
T |
|
| Q |
301 |
gactctgcaattcaagttttggaataagagaatcacctctcagaagggttgagtcagtttgagttagtttatg |
373 |
Q |
| |
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| T |
33117065 |
gactctgcaattcaagttttggaataagagaatcgcctctcagaagggttgagtcagtttgagttagtttatg |
33117137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 33119996 - 33120136
Alignment:
| Q |
20 |
ttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
119 |
Q |
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| T |
33119996 |
ttcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
33120095 |
T |
|
| Q |
120 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
160 |
Q |
| |
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| ||| |||| ||||| |||||||||||||||||||||||| |
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| T |
33120096 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
33120136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 368 - 657
Target Start/End: Complemental strand, 25044210 - 25043905
Alignment:
| Q |
368 |
tttatgttagttttaaggtttgtgtgtattattctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtat |
467 |
Q |
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| T |
25044210 |
tttatgttagttttaaggtttgtgtgtattattctaattgaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgtat |
25044111 |
T |
|
| Q |
468 |
tcagcaaaaaacaaaaaacaa-------ttttaagttttatgaattttgttctgtcannnnnnnnnnnatatttt---------atattgaatttgattc |
551 |
Q |
| |
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| T |
25044110 |
tcagcaaaaaccaaaaaccaaaaaccaattttaagttttatgaattttgttctgtcatttttttttttattttttttatatttcatattgaatttgattc |
25044011 |
T |
|
| Q |
552 |
aaatctttatatacactatcctcgttaaagcatgtgactttgtgagttcctttatataaccatgcaccataatcacataatctttatataaccattagac |
651 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25044010 |
aaatctttatatacactatcctcgttaaagcatacgactttgtgagttcctttatataaccatgcagcataatcacataatctttatataaccattagac |
25043911 |
T |
|
| Q |
652 |
cccctt |
657 |
Q |
| |
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|||||| |
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|
| T |
25043910 |
cccctt |
25043905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 368 - 606
Target Start/End: Complemental strand, 28649689 - 28649464
Alignment:
| Q |
368 |
tttatgttagttttaaggtttgtgtgtattattctaatt-gaagactccatgaatacacttattttatggattatggaaatgtataattttccttatgta |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| | |
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| T |
28649689 |
tttatgttagttttaaggtttgtgtgtataattctaatttgcagactccatgaattcgcttatagtatggattatggaaatgtataattttccttatgaa |
28649590 |
T |
|
| Q |
467 |
ttcagcaaaaaacaaaaaacaattttaagttttatgaattttgttctgtcannnnnnnnnnnatattttatattgaatttgattcaaatctttatataca |
566 |
Q |
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| T |
28649589 |
tttagc---------aaaacaattttaaattttatgaattttgttctgtca-----ttttttatgtttcatattgaatatgattcaaatttatatataca |
28649504 |
T |
|
| Q |
567 |
ctatcctcgttaaagcatgtgactttgtgagttcctttat |
606 |
Q |
| |
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| T |
28649503 |
ctctcctcatcaaagcatgcgactttgtgagttcctttat |
28649464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 21492014 - 21491884
Alignment:
| Q |
20 |
ttcttttcacctggaatggggactgttccgtgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
119 |
Q |
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||||| || ||||||||||| || ||||| ||||| | |||||||| || || || || |||||||||||| | ||||||||||| || ||||||| | |
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| T |
21492014 |
ttcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatcaacaacag |
21491915 |
T |
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| Q |
120 |
tttggatctcaaaccttattgtttctcaatc |
150 |
Q |
| |
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| ||| | || |||||| ||||||||||||| |
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| T |
21491914 |
tgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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