View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_23 (Length: 270)
Name: NF20347_low_23
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 1770733 - 1770989
Alignment:
| Q |
2 |
tatttctaagtgtatattgaggcaataaagttttgcttcatttaatttcataatacaaaattctctatttctctatataatgctaataatgctattttta |
101 |
Q |
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| T |
1770733 |
tatttctaagtgtatattgaggcaataaagttttgcttcatttaatttcataaaacaaaattctctatttctctatataatgctaataatgctattttta |
1770832 |
T |
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| Q |
102 |
ctgggaaagnnnnnnnatatgataaaataagcattattcaagtgccaaaatagtgagagtacagtcaaattgattattggttgagacattcttcatccat |
201 |
Q |
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| T |
1770833 |
ctgggaaagtttttttatatgataaaataagcattattcaagtgccaaaacagtgagagtacagttaaattggttattggttgagacattcttcatccat |
1770932 |
T |
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| Q |
202 |
attttgaaagacaattacatgctatcaatgcacataaaaaattcataagtcaaaagt |
258 |
Q |
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| T |
1770933 |
attttgaaagacaattacatgctatcaatgcacataaaaaattcataagtcaaaagt |
1770989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 1786340 - 1786461
Alignment:
| Q |
135 |
ttattcaagtgccaaaatagtgagagtacagtcaaattgattattggttgagacattcttcatccatattttgaaagacaattacatgctatcaatgcac |
234 |
Q |
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| T |
1786340 |
ttatccaaatgccagaatagcgagaatacagttaaattggttagtggttgagacattc--catccatattttgaaagacaaatacatgctatcaatgctc |
1786437 |
T |
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| Q |
235 |
ataaaaaattcataagtcaaaagt |
258 |
Q |
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| T |
1786438 |
ataaaaaatttataagtcaaaagt |
1786461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 1781434 - 1781553
Alignment:
| Q |
135 |
ttattcaagtgccaaaatagtgagagtacagtcaaattgattattggttgagacattcttcatccatattttgaaagacaattacatgctatcaatgcac |
234 |
Q |
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| T |
1781434 |
ttatccaaatgccagaatagcgagaatacagttaaattggttagtggttgagacattc--catccatattttgaaagacaaatacatgctatcaatgttc |
1781531 |
T |
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| Q |
235 |
ataaaaaattcataagtcaaaa |
256 |
Q |
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| T |
1781532 |
ataaaaaatttataagtcaaaa |
1781553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 34570138 - 34570247
Alignment:
| Q |
137 |
attcaagtgccaaaatagtgagagtacagtcaaattgattattggttgagacattcttcatccatattttgaaagacaattacatgctatcaatgcacat |
236 |
Q |
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| T |
34570138 |
attcaaatgctaaaatagcgagggtacaatcaaattggttacgaggtgagacattccccatccatattttgaaagccaaatacatgttatcaatacacat |
34570237 |
T |
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| Q |
237 |
aaaaaattca |
246 |
Q |
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||||| |||| |
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| T |
34570238 |
aaaaatttca |
34570247 |
T |
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