View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_26 (Length: 256)
Name: NF20347_low_26
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 37373707 - 37373476
Alignment:
| Q |
16 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
115 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
37373707 |
caaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaataatgaattatagaatcctgtataaaaatgaaacattttaa |
37373608 |
T |
|
| Q |
116 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37373607 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatgaccggtacctccatttccggcgacctttttctggcggctttgttcag |
37373508 |
T |
|
| Q |
216 |
tcccttgcaacttagatccattcgatattctt |
247 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
37373507 |
tcccttgcaacttagatccattcgattttctt |
37373476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 7495098 - 7494875
Alignment:
| Q |
16 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
115 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
7495098 |
caaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaacattttaa |
7494999 |
T |
|
| Q |
116 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
7494998 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatgaccggtacctccatttccggcaacctttttctggcggctttgttcag |
7494899 |
T |
|
| Q |
216 |
tcccttgcaacttagatccattcg |
239 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7494898 |
tcccttgcaacttagatccattcg |
7494875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 26487686 - 26487455
Alignment:
| Q |
16 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |
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| T |
26487686 |
caaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacgatgaattatagaatcctgtataaaaatgaaacattttaa |
26487587 |
T |
|
| Q |
116 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
215 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
26487586 |
ctaagagtggatttttcaatgactaatcagcacaagaatgtttaccatccatggccggtacctccatttccagcgacctttttctggcggctttgttcag |
26487487 |
T |
|
| Q |
216 |
tcccttgcaacttagatccattcgatattctt |
247 |
Q |
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|||||||||||||||||||||||||| ||||| |
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|
| T |
26487486 |
tcccttgcaacttagatccattcgattttctt |
26487455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 38 - 247
Target Start/End: Original strand, 38618446 - 38618648
Alignment:
| Q |
38 |
taattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaactaagagtggattttccaatga |
137 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
38618446 |
taattttagcatgaaccgttcgacaataaatcaacaacaatgaattatagaatcc-------aaatgaaacattttaactaagagtggattttccaatga |
38618538 |
T |
|
| Q |
138 |
ctaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcagtcccttgcaacttagatccatt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38618539 |
ctaattagcacaagaatgtttaccatccatggccggtacctccatttccggcgacctttttctggtggctttgttcagtcccttgcaacttagatccatt |
38618638 |
T |
|
| Q |
238 |
cgatattctt |
247 |
Q |
| |
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|||| ||||| |
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| T |
38618639 |
cgattttctt |
38618648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 35843853 - 35843960
Alignment:
| Q |
121 |
agtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttc-ggcgacctttttctggcggctttgttcagtccc |
219 |
Q |
| |
|
||||||||||||| |||| |||||||| ||| |||||| ||||||||||| | ||| ||||| |||||||||| || ||| || |||||| ||||| |
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| T |
35843853 |
agtggattttccagcgactcattagcacgagaccttttaccgtccatggccggcatctctgttttccggcgacctttctccggcagcgttgttctgtccc |
35843952 |
T |
|
| Q |
220 |
ttgcaact |
227 |
Q |
| |
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|||||||| |
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|
| T |
35843953 |
ttgcaact |
35843960 |
T |
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