View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_27 (Length: 250)
Name: NF20347_low_27
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 13320543 - 13320319
Alignment:
| Q |
17 |
atatagtgccttggactggccttacataatacgttctcacagtttcctttcctacgtacaatattcactcctaatgtctttgtagttcatagttatgatc |
116 |
Q |
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| T |
13320543 |
atatagtgccttggactggccttacataatacgttctcacagtttcctttcctacgtacaatattcactcctaatgtctttgtagttcatagttataatc |
13320444 |
T |
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| Q |
117 |
atattaaataaataaaaaa---ttcctttgacatattatttatcattatcaaattttaacaattatcaagtctttctcacaaatatatatcagtgaaaat |
213 |
Q |
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|||||||||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13320443 |
atattaaataaaaaaaataattttcctttgacagattatttatcattatcaaattttaacaattatcaagtctttctcacaaatatatatcagtgaaaat |
13320344 |
T |
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| Q |
214 |
taagaacctaaagtctcttattctc |
238 |
Q |
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||||||||||||||||||||||||| |
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| T |
13320343 |
taagaacctaaagtctcttattctc |
13320319 |
T |
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