View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20347_low_3 (Length: 585)

Name: NF20347_low_3
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20347_low_3
NF20347_low_3
[»] chr4 (19 HSPs)
chr4 (24-436)||(33770968-33771365)
chr4 (441-523)||(21837393-21837475)
chr4 (441-488)||(20143283-20143330)
chr4 (441-486)||(6056998-6057043)
chr4 (435-487)||(14527574-14527626)
chr4 (433-485)||(13925649-13925701)
chr4 (441-485)||(18363653-18363697)
chr4 (439-483)||(26393400-26393444)
chr4 (441-485)||(36599231-36599275)
chr4 (441-484)||(24666133-24666176)
chr4 (443-485)||(26354232-26354274)
chr4 (436-474)||(34941501-34941539)
chr4 (442-479)||(34450820-34450857)
chr4 (441-486)||(38519186-38519231)
chr4 (442-479)||(47156638-47156675)
chr4 (442-479)||(47157385-47157422)
chr4 (441-485)||(13924797-13924841)
chr4 (441-485)||(51386460-51386504)
chr4 (441-485)||(53778415-53778459)
[»] chr6 (2 HSPs)
chr6 (442-569)||(13084795-13084922)
chr6 (441-562)||(5310454-5310574)
[»] chr2 (7 HSPs)
chr2 (441-516)||(34595903-34595978)
chr2 (442-487)||(20606919-20606964)
chr2 (441-473)||(127037-127069)
chr2 (436-479)||(127741-127784)
chr2 (446-485)||(40584369-40584408)
chr2 (442-476)||(44297423-44297457)
chr2 (436-485)||(10173935-10173984)
[»] chr8 (14 HSPs)
chr8 (441-562)||(16910970-16911090)
chr8 (442-506)||(203460-203524)
chr8 (442-506)||(318297-318361)
chr8 (441-486)||(4402286-4402331)
chr8 (436-485)||(26847096-26847145)
chr8 (434-479)||(42094006-42094051)
chr8 (436-484)||(22632969-22633017)
chr8 (441-484)||(22632326-22632369)
chr8 (441-508)||(31713845-31713912)
chr8 (442-485)||(36180692-36180735)
chr8 (442-479)||(202582-202619)
chr8 (442-479)||(317419-317456)
chr8 (441-485)||(5434036-5434080)
chr8 (442-486)||(9929205-9929249)
[»] chr7 (19 HSPs)
chr7 (441-523)||(22297018-22297100)
chr7 (436-479)||(46491694-46491737)
chr7 (441-486)||(3314959-3315004)
chr7 (442-486)||(36611556-36611600)
chr7 (442-479)||(2403447-2403484)
chr7 (442-487)||(30581264-30581309)
chr7 (442-479)||(42818559-42818596)
chr7 (442-486)||(37783480-37783524)
chr7 (441-485)||(41965777-41965821)
chr7 (441-479)||(767140-767178)
chr7 (441-479)||(17114149-17114187)
chr7 (436-486)||(34808988-34809038)
chr7 (436-486)||(35892302-35892352)
chr7 (436-485)||(24874578-24874627)
chr7 (441-485)||(767966-768010)
chr7 (443-479)||(7329074-7329110)
chr7 (436-484)||(28007156-28007204)
chr7 (436-484)||(44120357-44120405)
chr7 (441-485)||(44876934-44876978)
[»] chr3 (18 HSPs)
chr3 (441-507)||(54308457-54308523)
chr3 (441-562)||(54751800-54751920)
chr3 (442-507)||(18745348-18745413)
chr3 (441-484)||(20807941-20807984)
chr3 (441-484)||(20808608-20808651)
chr3 (442-507)||(18744625-18744690)
chr3 (441-484)||(4706957-4707000)
chr3 (441-487)||(15287571-15287617)
chr3 (441-484)||(9830576-9830619)
chr3 (435-478)||(31629452-31629495)
chr3 (441-484)||(33762689-33762732)
chr3 (441-484)||(49350271-49350314)
chr3 (441-479)||(47571200-47571238)
chr3 (441-479)||(49349680-49349718)
chr3 (441-479)||(53343862-53343900)
chr3 (441-486)||(3584009-3584054)
chr3 (442-479)||(29516555-29516592)
chr3 (442-479)||(47571945-47571982)
[»] chr1 (12 HSPs)
chr1 (443-506)||(16450444-16450507)
chr1 (443-506)||(16460020-16460083)
chr1 (435-484)||(24848427-24848476)
chr1 (441-509)||(24847787-24847855)
chr1 (436-484)||(26240872-26240920)
chr1 (441-479)||(16449559-16449597)
chr1 (441-479)||(16459133-16459171)
chr1 (436-484)||(26240113-26240161)
chr1 (441-484)||(2260857-2260900)
chr1 (436-486)||(27745555-27745605)
chr1 (441-478)||(14166914-14166951)
chr1 (441-485)||(12449312-12449356)
[»] chr5 (14 HSPs)
chr5 (441-508)||(27345896-27345963)
chr5 (441-507)||(29595572-29595638)
chr5 (434-479)||(2029053-2029098)
chr5 (441-485)||(23253486-23253530)
chr5 (442-486)||(39466890-39466934)
chr5 (441-485)||(39937906-39937950)
chr5 (441-484)||(15561414-15561457)
chr5 (434-485)||(16195129-16195180)
chr5 (441-484)||(24565577-24565620)
chr5 (441-484)||(24606613-24606656)
chr5 (436-486)||(29594905-29594955)
chr5 (435-485)||(35524120-35524170)
chr5 (441-479)||(40372166-40372204)
chr5 (436-485)||(2028336-2028385)
[»] scaffold0627 (1 HSPs)
scaffold0627 (443-485)||(6470-6512)
[»] scaffold0002 (1 HSPs)
scaffold0002 (442-503)||(97209-97270)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 436
Target Start/End: Complemental strand, 33771365 - 33770968
Alignment:
Q  24 tgagacctaatgcgataatttcagagaagagtcaaattcggattttatgctgctcctgctgctgctacttannnnnnnnnnnnnnnnnngtatgtattgg 123  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | || |||                   |||||||||||    
T  33771365 tgagatctaatgcgataatttcagagaagagtcaaattcggattttatgctgctcctacttattcttctt------------cttctctgtatgtattgg 33771278  T
Q  124 ctgaaattgcgagtctctgccatgctatcacttttacttatttatggaactgtgtgttgtgtgttcatatcatgtaaagacaattgtggcaaaagagata 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33771277 ctgaaattgcgagtctctgccatgctatcacttttacttatttatggaactgtgtgttgtgtgttcatatcatgtaaagacaattgtggcaaaagagata 33771178  T
Q  224 ttattattctatttaagaattagaacgtggatgattttaaacaaaacaatatttttcataagaacaaactaaaccacctccttgtgtcnnnnnnnnnnct 323  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||          ||    
T  33771177 ttattattctatttaagaattagaacgtggatgattttaaac--aacaatatttttcataagaacaaactaaaccacctccttgtgtc-aaaaaaaaact 33771081  T
Q  324 aaaccacctccaaaattttgcactctggtggttcattcattacctttattctatattaattagtttttgagatgatatttctgcaaattatttttatgat 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33771080 aaaccacctccaaaattttgcactctggtggttcattcattacctttattctatattaattagtttttgagatgatatttctgcaaattatttttatgat 33770981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 21837393 - 21837475
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaattt 523  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||    
T  21837393 gattctagggtgagggtccaactaagtccctcaccggtttaccactaattttaacctttagattaaatagacccacacgattt 21837475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 20143283 - 20143330
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaa 488  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  20143283 gattctagggtgagggctcaactaagtccctcaccggtgtaccactaa 20143330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 6057043 - 6056998
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  6057043 gattctagggtgagggttctactaagtccctcaccggtggaccact 6056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 487
Target Start/End: Complemental strand, 14527626 - 14527574
Alignment:
Q  435 aaggttgattctagggtgagggttcaactaagtccctcaccggtgtaccacta 487  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||| |||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaaccacta 14527574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 485
Target Start/End: Complemental strand, 13925701 - 13925649
Alignment:
Q  433 taaaggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||| |||||||  ||||||| |||||||||||||||||||||| |||||    
T  13925701 taaaggtggattctaaagtgagggatcaactaagtccctcaccggtggaccac 13925649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 18363697 - 18363653
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  18363697 gattctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 483
Target Start/End: Complemental strand, 26393444 - 26393400
Alignment:
Q  439 ttgattctagggtgagggttcaactaagtccctcaccggtgtacc 483  Q
    |||||||||||||||||| || | |||||||||||||||||||||    
T  26393444 ttgattctagggtgagggctctattaagtccctcaccggtgtacc 26393400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 36599231 - 36599275
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||    
T  36599231 gattctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 24666133 - 24666176
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||    
T  24666133 gattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Complemental strand, 26354274 - 26354232
Alignment:
Q  443 ttctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||| |||||||||||| |||| |||||    
T  26354274 ttctagggtgagggttcaattaagtccctcacaggtggaccac 26354232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcac 474  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 34450820 - 34450857
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  34450820 attctagggtgagggatcaattaagtccctcaccggtg 34450857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 38519231 - 38519186
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||||||||| ||  ||| ||||||||||||||||||||||||    
T  38519231 gattctagggtgaaggagcaattaagtccctcaccggtgtaccact 38519186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 47156638 - 47156675
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  47156638 attctagggtgagggttcaattaagtccctcatcggtg 47156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 47157422 - 47157385
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  47157422 attctagggtgagggttcaattaaatccctcaccggtg 47157385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 13924797 - 13924841
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||||||||||||||| |||| ||| ||||||||||||| |||||    
T  13924797 gattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 51386460 - 51386504
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| |||||||||||||||| ||||||||||||| ||| |||||    
T  51386460 gattttagggtgagggttcaattaagtccctcaccagtgaaccac 51386504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 53778459 - 53778415
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||    
T  53778459 gattctagggtgagggtccatttaagtccctcaccggtggaccac 53778415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 442 - 569
Target Start/End: Complemental strand, 13084922 - 13084795
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaatttccatgttcattaccgcac 541  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13084922 attctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaaaagactcacataatttccatgttcattaccgcac 13084823  T
Q  542 atgaatattatgttccactctttcttcc 569  Q
    ||||||||||||||||||||||||||||    
T  13084822 atgaatattatgttccactctttcttcc 13084795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 562
Target Start/End: Original strand, 5310454 - 5310574
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaatttccatgttcattaccgca 540  Q
    ||||||||| |||||| |||| ||||||||||| || ||||||| |||  ||||| |||| |||||| |  ||||||| ||||||||  |||||| ||||    
T  5310454 gattctaggatgagggctcaaataagtccctcatcgatgtaccattaatattgacttttatattaaagaagctcacacgatttccatactcattatcgca 5310553  T
Q  541 catgaatattatgttccactct 562  Q
    | || |||| ||||||| ||||    
T  5310554 c-tggatatcatgttcctctct 5310574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 34595978 - 34595903
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcac 516  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  34595978 gattctagagtgagggttcaactaaatccctcaccggtgtaccactaattttgacctttaaattaaaaagactcac 34595903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 20606964 - 20606919
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccacta 487  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  20606964 attctagggtgagggttcaattaagtccctcaccggtgaaccacta 20606919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 127037 - 127069
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctca 473  Q
    |||||||||||||||||||||||||||||||||    
T  127037 gattctagggtgagggttcaactaagtccctca 127069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 127784 - 127741
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||    
T  127784 aggtggattctagggtgagggttcaattaagtccttcaccggtg 127741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 485
Target Start/End: Complemental strand, 40584408 - 40584369
Alignment:
Q  446 tagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  40584408 tagggtgagggttcaactaggtccctcaccggtgaaccac 40584369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 476
Target Start/End: Complemental strand, 44297457 - 44297423
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccg 476  Q
    |||||||||||||||||||| ||||||||||||||    
T  44297457 attctagggtgagggttcaattaagtccctcaccg 44297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 10173935 - 10173984
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| |||||||||||||||||||   ||||||||||||||||| |||||    
T  10173935 aggtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 562
Target Start/End: Complemental strand, 16911090 - 16910970
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaatttccatgttcattaccgca 540  Q
    |||||||||||||||| |||| ||||||||||||||||||||||  || |||||| |||||||||||||  ||||||| ||||||||  |||||||||||    
T  16911090 gattctagggtgagggctcaattaagtccctcaccggtgtaccatcaattttgacttttagattaaaaaagctcacacgatttccatactcattaccgca 16910991  T
Q  541 catgaatattatgttccactct 562  Q
    | || |||| ||||||| ||||    
T  16910990 c-tggatatcatgttcctctct 16910970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 203524 - 203460
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaa 506  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||| ||| ||| |||||||||    
T  203524 attctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaa 203460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 318361 - 318297
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaa 506  Q
    |||||||||||||||||||| ||| ||| ||| |||||||||||||| ||| ||| |||||||||    
T  318361 attctagggtgagggttcaattaaatccttcatcggtgtaccactaaatttaaccattagattaa 318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 441 - 486
Target Start/End: Complemental strand, 4402331 - 4402286
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||    
T  4402331 gattctagggtgagggttctattaagtccctcaccggtgaaccact 4402286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 26847096 - 26847145
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| ||||||||||||||||| ||| ||||||||||||||||| |||||    
T  26847096 aggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 42094006 - 42094051
Alignment:
Q  434 aaaggttgattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||    
T  42094006 aaaggtggattctagggtgagggatcaattaagtccctcaccggtg 42094051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 22633017 - 22632969
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||| |||||||||||||||| |||| ||||||||||||||||| ||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 22632326 - 22632369
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||    
T  22632326 gattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 508
Target Start/End: Complemental strand, 31713912 - 31713845
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaa 508  Q
    ||||||||||||||||||| |  |||||||||||| ||| |||||| | ||| ||| |||||||||||    
T  31713912 gattctagggtgagggttctaacaagtccctcacccgtggaccactcaatttcaccgttagattaaaa 31713845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 485
Target Start/End: Original strand, 36180692 - 36180735
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||| || ||||||||||||||||| |||||    
T  36180692 attctagggtgagggtttaattaagtccctcaccggtgaaccac 36180735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 202582 - 202619
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  202582 attctaggatgagggttcaattaagtccctcaccggtg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 317419 - 317456
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  317419 attctaggatgagggttcaattaagtccctcaccggtg 317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 5434036 - 5434080
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||| ||| ||||||| ||||||||| |||||    
T  5434036 gattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 9929205 - 9929249
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||||| |||||||| || ||||||||||||||||||| ||||||    
T  9929205 attctaaggtgagggctctactaagtccctcaccggtggaccact 9929249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 22297018 - 22297100
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaattt 523  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||| ||| |||||||||||||| |||| ||||| ||||    
T  22297018 gattctagggtgagagtccaactaagtccctcaccgatgtaccactaattttaacctttagattaaatagacccacacgattt 22297100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 479
Target Start/End: Complemental strand, 46491737 - 46491694
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtg 46491694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 3314959 - 3315004
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  3314959 gattctacggtgagggttcaattaagtccctcaccggtgtaccact 3315004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 36611556 - 36611600
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 2403484 - 2403447
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2403484 attctaggatgagggttcaactaagtccctcaccggtg 2403447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 30581309 - 30581264
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccacta 487  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||    
T  30581309 attctagggtgagggttcaattaagtccctcaccagtgaaccacta 30581264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 42818596 - 42818559
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||||||| |||||||||||||||||    
T  42818596 attctagggtgagggttcaattaagtccctcaccggtg 42818559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 37783524 - 37783480
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||    
T  37783524 attctagggtgagggctctactaagtccctcaccggtggaccact 37783480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 41965821 - 41965777
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||    
T  41965821 gattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 767140 - 767178
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  767140 gattctagggtgagggtccaattaagtccctcaccggtg 767178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 17114149 - 17114187
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  17114149 gattctagggtgagggttcaattaagtccctcatcggtg 17114187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 34809038 - 34808988
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||| |||||||| |||||||||||| ||||||| ||| ||||||||||||    
T  34809038 aggtggattctagagtgagggttcaattaagtccttcatcggtgtaccact 34808988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 35892352 - 35892302
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||| ||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  35892352 aggtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 35892302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Complemental strand, 24874627 - 24874578
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| ||||||||||||||||||||| || |||||||| ||||| |||||    
T  24874627 aggtggattctagggtgagggttcaattaggtccctcatcggtggaccac 24874578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 768010 - 767966
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| |||||||||||| ||| ||||||||||||||||| |||||    
T  768010 gattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 7329110 - 7329074
Alignment:
Q  443 ttctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  7329110 ttctagggtgagggttcaattaagtccctcactggtg 7329074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 28007156 - 28007204
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||| ||||||||||||||||  ||| ||||||||||||||||| ||||    
T  28007156 aggtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 44120357 - 44120405
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||| ||||||| ||||||||  ||| ||||||||||||||||||||||    
T  44120357 aggtggattctaaggtgagggagcaattaagtccctcaccggtgtacca 44120405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 44876978 - 44876934
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||||||||||||||| |||| |||||||||||||| || |||||    
T  44876978 gattctagggtgagggatcaattaagtccctcaccgatggaccac 44876934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 441 - 507
Target Start/End: Original strand, 54308457 - 54308523
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaa 507  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||| ||||||||||    
T  54308457 gattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaa 54308523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 562
Target Start/End: Original strand, 54751800 - 54751920
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaagactcacacaatttccatgttcattaccgca 540  Q
    ||||||||| ||||||||||| |||||| |||| |||||||||| ||| |||||| |||| |||||| |  ||||||  |||||||| ||||||||||||    
T  54751800 gattctaggatgagggttcaaataagtctctcatcggtgtaccattaattttgacttttatattaaagaagctcacatgatttccatattcattaccgca 54751899  T
Q  541 catgaatattatgttccactct 562  Q
    | || |||| ||||||| ||||    
T  54751900 c-tggatatcatgttcctctct 54751920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 507
Target Start/End: Complemental strand, 18745413 - 18745348
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaa 507  Q
    ||||||||||||||||||||  |||||||||||||||| |||||| | ||||||| ||||||||||    
T  18745413 attctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagattaaa 18745348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 20807941 - 20807984
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  20807941 gattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 484
Target Start/End: Complemental strand, 20808651 - 20808608
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  20808651 gattctagggtgagggttcaagtaagtccctcaccggtgtacca 20808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 507
Target Start/End: Original strand, 18744625 - 18744690
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaa 507  Q
    |||||||| |||||||| ||  |||||||||||||||| |||||||| ||||||| ||||||||||    
T  18744625 attctaggatgagggtttaatcaagtccctcaccggtgcaccactaaatttgaccattagattaaa 18744690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 484
Target Start/End: Complemental strand, 4707000 - 4706957
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  4707000 gattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 487
Target Start/End: Original strand, 15287571 - 15287617
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccacta 487  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  15287571 gattctagggtgagggtccaattaagtccctcaccggtggaccacta 15287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 9830576 - 9830619
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||    
T  9830576 gattctcgggtgagggttcaattaagtccctcaccggtggacca 9830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 31629495 - 31629452
Alignment:
Q  435 aaggttgattctagggtgagggttcaactaagtccctcaccggt 478  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||    
T  31629495 aaggttgattctaggatgatggttcaaccaagtccctcaccggt 31629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Complemental strand, 33762732 - 33762689
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||    
T  33762732 gattctaaggtgagggttctattaagtccctcaccggtgtacca 33762689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Complemental strand, 49350314 - 49350271
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||    
T  49350314 gattctagggtgagggttcaattaagtccctcgccggtgaacca 49350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 47571200 - 47571238
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  47571200 gattctagggtgagggatcaattaagtccctcaccggtg 47571238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 49349680 - 49349718
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  49349680 gattctagggtgagggatcaattaagtccctcaccggtg 49349718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 53343900 - 53343862
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  53343900 gattctagggtgagggttcaaacaagtccctcaccggtg 53343862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 3584009 - 3584054
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  3584009 gattctagggtgagggagcaattaaatccctcaccggtgtaccact 3584054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 29516592 - 29516555
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  29516592 attctacggtgagggttcaattaagtccctcaccggtg 29516555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 47571982 - 47571945
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  47571982 attctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 16450507 - 16450444
Alignment:
Q  443 ttctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaa 506  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||| ||| ||| |||||||||    
T  16450507 ttctagggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaa 16450444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 506
Target Start/End: Complemental strand, 16460083 - 16460020
Alignment:
Q  443 ttctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaa 506  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||| ||| ||| |||||||||    
T  16460083 ttctagggtgagggttcaattaaatccctcactggtgtaccactaaatttaaccattagattaa 16460020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 484
Target Start/End: Complemental strand, 24848476 - 24848427
Alignment:
Q  435 aaggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  24848476 aaggtggattctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 509
Target Start/End: Original strand, 24847787 - 24847855
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaaa 509  Q
    ||||||||||||||||||| | |||||||||||||||||||||| | |  |||||| |||||| |||||    
T  24847787 gattctagggtgagggttctattaagtccctcaccggtgtaccatttaaattgaccgttagatgaaaaa 24847855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 484
Target Start/End: Complemental strand, 26240920 - 26240872
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 16449559 - 16449597
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16449559 gattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 479
Target Start/End: Original strand, 16459133 - 16459171
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16459133 gattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 26240113 - 26240161
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||| |||||||||||||||| |||| ||||||||||||||||| ||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 2260857 - 2260900
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||||||||||||||||||||  ||||||||||||||| |||||    
T  2260857 gattctagggtgagggttcaatcaagtccctcaccggtatacca 2260900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 27745555 - 27745605
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||| ||||||| ||||||||||||| |||||||||||||| | |||||||    
T  27745555 aggtggattctaaggtgagggttcaattaagtccctcaccgatataccact 27745605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 14166951 - 14166914
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggt 478  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  14166951 gattctagggtgagggctcaattaagtccctcaccggt 14166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 12449356 - 12449312
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| ||||||||||| |||| ||||||||||||||||| |||||    
T  12449356 gattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 508
Target Start/End: Complemental strand, 27345963 - 27345896
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaaa 508  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||| | ||||| | || ||||||||    
T  27345963 gattctagggtgagggttcaattaagtccctcaccgatataccacttattttgatcattggattaaaa 27345896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 507
Target Start/End: Complemental strand, 29595638 - 29595572
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagattaaa 507  Q
    |||||||| |||||||||||| ||||||||||||| |||||||| |   ||||||| ||||||||||    
T  29595638 gattctagcgtgagggttcaattaagtccctcaccagtgtaccagtttatttgaccattagattaaa 29595572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 2029098 - 2029053
Alignment:
Q  434 aaaggttgattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||    
T  2029098 aaaggtggattctagggtgagggctcaattaagtccctcaccggtg 2029053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 23253530 - 23253486
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||    
T  23253530 gattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 486
Target Start/End: Original strand, 39466890 - 39466934
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  39466890 attctagggtgagggtccaattaagtccctcaccggtggaccact 39466934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 39937950 - 39937906
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||    
T  39937950 gattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 15561414 - 15561457
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    |||||||||||||||| || ||||||||||||||||||| ||||    
T  15561414 gattctagggtgagggctctactaagtccctcaccggtggacca 15561457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 485
Target Start/End: Complemental strand, 16195180 - 16195129
Alignment:
Q  434 aaaggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||||| |||||||||||||||| |||| ||||||| |||| ||||||||||    
T  16195180 aaaggtggattctagggtgagggatcaattaagtccatcactggtgtaccac 16195129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 24565577 - 24565620
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  24565577 gattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 24606613 - 24606656
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtgtacca 484  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||    
T  24606613 gattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 29594905 - 29594955
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccact 486  Q
    |||| ||||||||||||||||||||| ||||| | |||||| |||||||||    
T  29594905 aggtggattctagggtgagggttcaattaagttcttcaccgatgtaccact 29594955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 35524120 - 35524170
Alignment:
Q  435 aaggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||| ||||||||| |||| |||||| ||||||||||||||||| |||||    
T  35524120 aaggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 479
Target Start/End: Complemental strand, 40372204 - 40372166
Alignment:
Q  441 gattctagggtgagggttcaactaagtccctcaccggtg 479  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  40372204 gattctagggtgagggttcaattaagttcctcaccggtg 40372166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 2028336 - 2028385
Alignment:
Q  436 aggttgattctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    |||| |||| ||||||||||||||||||||||||||| ||| || |||||    
T  2028336 aggtggattttagggtgagggttcaactaagtccctcgccgatggaccac 2028385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 485
Target Start/End: Original strand, 6470 - 6512
Alignment:
Q  443 ttctagggtgagggttcaactaagtccctcaccggtgtaccac 485  Q
    ||||||||||||||||||| |||||||||||||| || |||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatggaccac 6512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 97209 - 97270
Alignment:
Q  442 attctagggtgagggttcaactaagtccctcaccggtgtaccactaactttgacctttagat 503  Q
    |||||| ||||| |||||||  |||||||||||| ||| |||||||| ||||||| ||||||    
T  97209 attctaaggtgatggttcaatcaagtccctcaccagtgcaccactaaatttgaccattagat 97270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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