View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20347_low_30 (Length: 239)

Name: NF20347_low_30

Description: NF20347

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20347_low_30

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 149; E-Value: 8e-79

Query Start/End: Original strand, 12 - 187

Target Start/End: Original strand, 21495873 - 21496042

Alignment:

Q	12	agcagagaacatgtaagggcattaaagaccattaaagtaaaaggttgaaattcacaagtcatactcatgagtaatatatgatctcaaaaattcatttacc	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21495873	agcagagaacatgtaagggcattaaagaccattaaagtaaaaggttgaaattcacaagtcat------gagtaatctatgatctcaaaaattcatttacc	21495966	T

Q	112	tgaagccatgtcttcttttctactgctggaaattcatctcttatatacaaaagagctccagatataactcctgcac	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21495967	tgaagccatgtcttcttttctactgctggaaattcatctcttatatacaaaagagctccagatataactcctgcac	21496042	T

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Target: chr2; HSP #2

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 145 - 187

Target Start/End: Original strand, 21562516 - 21562558

Alignment:

Q	145	tcatctcttatatacaaaagagctccagatataactcctgcac	187	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	21562516	tcatctcttatatacaaaagagccccagatatgactcctgcac	21562558	T

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