View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_33 (Length: 237)
Name: NF20347_low_33
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44831061 - 44831279
Alignment:
| Q |
1 |
gccaagacaaagaaaaattaaagaaagaacaaaaagtcagtaattcataccgaagttagtaatgaaagttccttgttgtttgtagctacaagttagtaat |
100 |
Q |
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| T |
44831061 |
gccaagacaaagaaaaattaaagaaagaacaaaaagtcagtaattcataccgaagttagtaatgaaagttccttgttgtttgtagctacaagttagtaat |
44831160 |
T |
|
| Q |
101 |
gattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatcgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44831161 |
gattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatcgat |
44831260 |
T |
|
| Q |
201 |
cacaaacccatcatataga |
219 |
Q |
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||||||||||||||||||| |
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| T |
44831261 |
cacaaacccatcatataga |
44831279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 33618203 - 33618093
Alignment:
| Q |
101 |
gattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatcgat |
200 |
Q |
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|||| |||||||| || ||||||||| |||||||| ||||||||||||||||||| | |||||||||||| | |||||| ||||||||||||| ||| |
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| T |
33618203 |
gatttttgtgtgcttgaagtctaattacttaatcaatgtgacaaggtcacatatcaatttcttatttccataggcatcactgcaactaccagt----gat |
33618108 |
T |
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| Q |
201 |
cacaaacccatcata |
215 |
Q |
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| T |
33618107 |
cacaaacccatcata |
33618093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 35904828 - 35904941
Alignment:
| Q |
98 |
aatgattcttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatccacttcttatttccacaagcatcattgcaactaccagtgatc |
197 |
Q |
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||||||| |||| |||||| ||| ||||||||||||| ||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||||| |
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| T |
35904828 |
aatgatttttgtctgcatggagttcaatttcttaatcaatgtgacaagatcacatatccatttctcatttccataagcatcattacaactaccagt---- |
35904923 |
T |
|
| Q |
198 |
gatcacaaacccatcata |
215 |
Q |
| |
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|||||||||||||||||| |
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| T |
35904924 |
gatcacaaacccatcata |
35904941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 43725457 - 43725406
Alignment:
| Q |
106 |
ttgtgtgcatgtagtctaatttcttaatcattgtgacaaggtcacatatcca |
157 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
43725457 |
ttgtgtgcatggagtctaatttcttaatcaatgtgacaaggtcacatatcca |
43725406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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