View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_36 (Length: 226)
Name: NF20347_low_36
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 34341180 - 34341385
Alignment:
| Q |
8 |
catcatcaagaagaacgtttgcaggcttgagatctcgatgaattatacgcggactatggcttgtatgaaggtattcaagaccagccgcaataccaagtgc |
107 |
Q |
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| T |
34341180 |
catcatcaagaagaacgtttgcaggcttgagatctcgatgaattatacgcggactatggcttgtatgaaggtattcaagaccagccgcaataccaagtgc |
34341279 |
T |
|
| Q |
108 |
aatcttatgccttgccaaccaatccaactctgcttcacctctttcaactttgtgcaacatatcctgcaaacttccattcttcatgaattcgtacacaaga |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34341280 |
aatcttatgccttgccaaccaatccaactctgcttcacctctttcaactttgtgcaacatatcctgcaaacttccattcttcatgaactcgtacacaaga |
34341379 |
T |
|
| Q |
208 |
taatga |
213 |
Q |
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|||||| |
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| T |
34341380 |
taatga |
34341385 |
T |
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