View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20347_low_6 (Length: 517)
Name: NF20347_low_6
Description: NF20347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20347_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 5420035 - 5420525
Alignment:
| Q |
18 |
tgaaagataattggtatgatgagaatgggaataaatcagggtcctctataatgtgtaatgtgttaaacaggttttatggnnnnnnnaagtttataaaata |
117 |
Q |
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| T |
5420035 |
tgaaagataattggtatgatgagaatgggaataaatcagggtcctctataatgtgtaatgtgttaatcaggttttatggtttttttaagtttataaaata |
5420134 |
T |
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| Q |
118 |
aatactttgattctcatgattgtatctgtttgtaatgtaaacttttaatttcttaattttaaataaacaaattttccttttaggctgcttgagaataccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420135 |
aatactttgattctcatgattgtatctgtttgtaatgtaaacttttaatttcttaattttaaataaacaaattttccttttaggctgcttgagaataccc |
5420234 |
T |
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| Q |
218 |
tttaaagatagacttggtatctttgacagcaagcattttgtttgcattgctgtattttctatacttgagtgtgatttaatctgcatatttgtaagcataa |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420235 |
tttaaagatagaattggtatctttgacagcaagcattttgtttgcattgctgtattttctatacttgagtgtgatttaatctgcatatttgtaagcataa |
5420334 |
T |
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| Q |
318 |
ccagtaaccataattctaaattgagattacggcctagt----gacattttggacaattatatcgcggcaaaatgcatccaatacggctaaaattgcaatt |
413 |
Q |
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|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420335 |
ccagcaaccataattctaaattgtgattacggcctagtgacagacattttggacaattatatcgcggcaaaatgcatccaatacggctaaaattgcaatt |
5420434 |
T |
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| Q |
414 |
accgtgcagttttagagacctctacaacttctatattatacagcaatatgaacctaactgttgaatttgaataatctcttttgctctagaataatct |
510 |
Q |
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| T |
5420435 |
accgtgcagttttagagacctctacaacttctatattatacagcaatatgaacctaactg------ttgaataatctcttttgctctagaataatct |
5420525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 15958640 - 15958697
Alignment:
| Q |
13 |
catcatgaaagataattggtatgatgagaatgggaataaatcagggtcctctataatg |
70 |
Q |
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| T |
15958640 |
catcataaaatataattggtgtgattagaatgagaataaatcagggtcctctataatg |
15958697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 15958584 - 15958631
Alignment:
| Q |
13 |
catcatgaaagataattggtatgatgagaatgggaataaatcagggtc |
60 |
Q |
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| T |
15958584 |
catcataaaatataattggtgtgattagaatgggaataaatcagggtc |
15958631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 22323608 - 22323661
Alignment:
| Q |
14 |
atcatgaaagataattggtatgatgagaatgggaataaatcagggtcctctata |
67 |
Q |
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||||| ||| ||||||| | |||| ||||||||||||||||||| ||||||||| |
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| T |
22323608 |
atcataaaatataattgatgtgattagaatgggaataaatcaggatcctctata |
22323661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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