View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_13 (Length: 341)
Name: NF20348_high_13
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 2969912 - 2969587
Alignment:
| Q |
1 |
aacaccaaccgccggctttggtttcttagcgaaaaaactcatctgctccaacaactgctccttagacaaatccttattacctctaaacacataagttttg |
100 |
Q |
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| T |
2969912 |
aacaccaaccgccggctttggtttcttagcgaaaaaactcatctgctccaacaactgctccttagacaaatccttattacctctaaacacataagttttg |
2969813 |
T |
|
| Q |
101 |
ggaacaataccaaaccctaactcatgaacatgaacaaaactcccaaacgtaatcaaaccaacaagcgaattatccggcaaaagctcaacagcttgagaaa |
200 |
Q |
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| T |
2969812 |
ggaacaataccaaaccctaactcatgaacatgaacaaaactcccaaacgtaatcaaaccaacaagcgaattatccggcaaaagctcaacagcttgagaaa |
2969713 |
T |
|
| Q |
201 |
tcgcagatcgaagaaaaccaatctcctcctcaatgacacacgtatcaacaacagacaaaaacaccggcggcacgtgcggtccagaatcgttaacagaatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2969712 |
tcgcagatcgaagaaaaccaatctcctcctcaatgacacacgtatcaacaacaaacaaaaacaccggcggcacgtgcggtccagaatcgttaacagaatc |
2969613 |
T |
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| Q |
301 |
atattcaacggtagtgtattgaggaa |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2969612 |
atattcaacggtagtgtattgaggaa |
2969587 |
T |
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