View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_14 (Length: 314)
Name: NF20348_high_14
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 26361717 - 26361439
Alignment:
| Q |
19 |
actcagacatactggtacaggacacagtccctgagtgtcaagcctggttgaatgaccgagaggccaagctgtttggtatcgagcacagcccctgagtctc |
118 |
Q |
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|||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| ||| | |||||| |||||||||||||||||||| | |||||||| |
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| T |
26361717 |
actcagtcatactgatacagaacacaacccctgagtgtcaagcctggttgaatgcccgggtggccaaactgtttggtatcgagcacaggcgttgagtctc |
26361618 |
T |
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| Q |
119 |
aaacctgaagagcaaggacgttctgaatgatcgagtggtcaaacagtttggtaccaaacatagtcccaagtgtcaagcttgaaagggcgaaaacgttctg |
218 |
Q |
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|||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
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| T |
26361617 |
aaacctgaagagaaaggaaattctgaatgatcgagtagtcaaacagtttggtaccaaacacagtcccaagtgtcaagcttgaaagggcgaagatgttctg |
26361518 |
T |
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| Q |
219 |
aatgaccaagtgaccaaacagtttggtcccaaacactatctatcttggtgagtttaatgcataactcggattacttgat |
297 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26361517 |
aatgtccaagtggtcaaacagtttgatcccaaacactatctatcgtggtgagtttaatgcataactcggattacttgat |
26361439 |
T |
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