View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_15 (Length: 307)
Name: NF20348_high_15
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 39365844 - 39365575
Alignment:
| Q |
17 |
acatcctatgacaagcaattaaagatatgaggcctcaaccatcaaagcttccttctatatattcatttacatttagctagcataaggtaacccatattat |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39365844 |
acatcccatgacaagcaattaaagatatgaggcctcaaccatcaaagcttccttctatatattcatttacatttagctagcataaggcaacccatattat |
39365745 |
T |
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| Q |
117 |
tgtcatattgacactttacatcatcgttcaagtgagtcaattacctccaaagccaagagaaaaatgactgtaagcaacaccactctctttcattcttcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39365744 |
tgtcatattgacactttacatcatcgttcaagtgagtca---acctccaaagccaagagcaaaatgactgtaagcaacaccactctctttcattcttcat |
39365648 |
T |
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| Q |
217 |
ctaatataatattttgctctaaattaagaaattaatgtttctttctttatcttaatttctttcagatcacagagatga |
294 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39365647 |
c-----taatattttgctctaaattaagaaattaatgtttctttctttatcttaatttctttcagattacagagatga |
39365575 |
T |
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