View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20348_high_17 (Length: 249)

Name: NF20348_high_17
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20348_high_17
NF20348_high_17
[»] chr6 (1 HSPs)
chr6 (1-230)||(33468898-33469131)
[»] chr2 (5 HSPs)
chr2 (186-230)||(40500549-40500593)
chr2 (188-219)||(45406081-45406112)
chr2 (186-223)||(40260970-40261007)
chr2 (188-216)||(27361315-27361343)
chr2 (188-228)||(34888067-34888107)
[»] chr7 (2 HSPs)
chr7 (188-226)||(23475750-23475788)
chr7 (188-226)||(23534163-23534201)
[»] chr3 (2 HSPs)
chr3 (188-228)||(11265014-11265054)
chr3 (188-228)||(46181244-46181284)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33468898 - 33469131
Alignment:
Q  1 actggaagtgtgattccatgttcgttttccatggaggttgcttagctgatcgatttgatgaattaaacaagaagaagaaaccgatcctaaattgaagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33468898 actggaagtgtgattccatgttcgttttccatggaggttgcttagctgatcgatttgatgaattaaacaagaagaagaaaccgatcctaaattgaagaaa 33468997  T
Q  101 ccgactaatccaaatttctga-----tgagtaaaacgatatcataaccctaattttcttttataataaatgttaaccctacnnnnnnnnattgaaaattg 195  Q
    |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  33468998 ccgactaatccaaatttctgatgagttgagtaaaacgatatcataaccctaattttcttttataataaatgttaaccctac-tttttttattgaaaattg 33469096  T
Q  196 ctcttctcccaacataaattgctcactctcaaccg 230  Q
    |||||||||||||||||||||||||||||||||||    
T  33469097 ctcttctcccaacataaattgctcactctcaaccg 33469131  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 40500549 - 40500593
Alignment:
Q  186 ttgaaaattgctcttctcccaacataaattgctcactctcaaccg 230  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||    
T  40500549 ttgaaaattgctcttctctcgacataaattgctcactcccaaccg 40500593  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 45406112 - 45406081
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctc 219  Q
    ||||||||||||||||||||||||||||||||    
T  45406112 gaaaattgctcttctcccaacataaattgctc 45406081  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40261007 - 40260970
Alignment:
Q  186 ttgaaaattgctcttctcccaacataaattgctcactc 223  Q
    |||||||||||||||||| | |||||||||||||||||    
T  40261007 ttgaaaattgctcttctctcgacataaattgctcactc 40260970  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 27361315 - 27361343
Alignment:
Q  188 gaaaattgctcttctcccaacataaattg 216  Q
    |||||||||||||||||||||||||||||    
T  27361315 gaaaattgctcttctcccaacataaattg 27361343  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34888107 - 34888067
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctcactctcaac 228  Q
    |||||||||||||||| ||||| |||||||||||| |||||    
T  34888107 gaaaattgctcttctcacaacagaaattgctcactttcaac 34888067  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 23475788 - 23475750
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctcactctca 226  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  23475788 gaaaattgctcttctcccaacaaaaaatgctcactctca 23475750  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 23534201 - 23534163
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctcactctca 226  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  23534201 gaaaattgctcttctcccaacaaaaaatgctcactctca 23534163  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11265014 - 11265054
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctcactctcaac 228  Q
    ||||||||||||||||| ||||||| |||||||||| ||||    
T  11265014 gaaaattgctcttctcctaacataatttgctcactcccaac 11265054  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 46181244 - 46181284
Alignment:
Q  188 gaaaattgctcttctcccaacataaattgctcactctcaac 228  Q
    ||||||||||||||||||| || || |||||||||||||||    
T  46181244 gaaaattgctcttctcccatcaaaatttgctcactctcaac 46181284  T

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