View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_18 (Length: 247)
Name: NF20348_high_18
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 2458939 - 2458724
Alignment:
| Q |
17 |
aatataactgaaggtttattatagccagcaatacagaggataccgttgcaagagccaacgatataataatcttcaacataataattgaaaggacctgtat |
116 |
Q |
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| T |
2458939 |
aatataactgaaggtttattatagccagcaatacagatgataccgttgcaagagccaacgatataataatcttcaacataataattgaaaggacctgtat |
2458840 |
T |
|
| Q |
117 |
attgtgtgaccatagtggttacgttggtggaaacgtaatcaaggggataacaagttaaaacacacttacttaaggtataagagtagctaactttgtatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458839 |
attgtgtgaccatagtggttacgttggtggaaacataatcaaggggatgacaagttaaaacacacttacttaaggtataagagtagctaactttgtatag |
2458740 |
T |
|
| Q |
217 |
gtggtgcgtggtggat |
232 |
Q |
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|||||||||||||||| |
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| T |
2458739 |
gtggtgcgtggtggat |
2458724 |
T |
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