View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20348_high_2 (Length: 595)
Name: NF20348_high_2
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_2 |
 | |
|
| [»] scaffold0129 (2 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 9 - 578
Target Start/End: Complemental strand, 7530871 - 7530302
Alignment:
| Q |
9 |
aatattctcagcaaaatttatatccaactacatacgcttggttctacttctggtatagtgaaactggattgtgactcaaaacaatggtacttcaatcaga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7530871 |
aatattctcagcaaaatttatatccaactacatacgcttggttctacttctggtatagtgaaactggattgtgactcaaaacaatagtacttcaatcaga |
7530772 |
T |
|
| Q |
109 |
aagaataaatggttggagtggaaatagcatctctaacctgtaacatttattatcacatgacaacccaaatggcctgtgaacatcggtcatttttctccca |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530771 |
aagaataaatggttggagtggaaattgcatctctaacctgtaacatttattatcacatgacaacccaaatggcctgtgaacatcggtcatttttctccca |
7530672 |
T |
|
| Q |
209 |
taaacaatggccatataaatatagatcctaagaaccacaataaaataactcttggatgaaaacaagaaaaataatcaattctgttgctcaaattgaaaga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7530671 |
taaacaatggccatataaatatagatcctaagaaccacaataaaatatctcttggatgaaaacaagaaaaataattaattctgttgctcaaattgaaaga |
7530572 |
T |
|
| Q |
309 |
aggctttccttgtaaattaccatctgacaattccatcctttgacaccaagctcctccatcatctgggtatccaaatcaaagtggaccatttctccatctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530571 |
aggctttccttgtaaattaccatctgacaattccatcctttgacaccaagctcctccatcatctgggtatccaaatcaaagtggaccatttctccatctt |
7530472 |
T |
|
| Q |
409 |
cttttgcaaaatatatattgcctttcttcgccgctccaatgggacgtctaacactagaagagagcctaacagtaaagatcttagtccacgatttccccac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530471 |
cttttgcaaaatatatattgcctttcttcgccgctccaatgggacgcctaacactagaagagagcctaacagtaaagatcttagtccacgatttccccac |
7530372 |
T |
|
| Q |
509 |
accaagttcacccaaaattgatatctgaaaagtagtcatctccccataatattgaagcaaagcaatgtgt |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7530371 |
accaagttcacccaaaattgatatctgaaaagtagtcatctccccataatattgaagcaaagcaatgtgt |
7530302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 544
Target Start/End: Original strand, 7488786 - 7488824
Alignment:
| Q |
506 |
cacaccaagttcacccaaaattgatatctgaaaagtagt |
544 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
7488786 |
cacaccaatttcacccaaaattgatatgtgaaaagtagt |
7488824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Complemental strand, 10519 - 10482
Alignment:
| Q |
506 |
cacaccaagttcacccaaaattgatatctgaaaagtag |
543 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
10519 |
cacaccaacttcacccaaaattgatatgtgaaaagtag |
10482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Original strand, 33583 - 33624
Alignment:
| Q |
506 |
cacaccaagttcacccaaaattgatatctgaaaagtagtcat |
547 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
33583 |
cacaccaagttcacccaaaatagaaatgtgaaaagtagtcat |
33624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 545
Target Start/End: Original strand, 16262 - 16298
Alignment:
| Q |
509 |
accaagttcacccaaaattgatatctgaaaagtagtc |
545 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
16262 |
accaatttcacccaaaattgatatgtgaaaagtagtc |
16298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University