View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20348_high_4 (Length: 507)

Name: NF20348_high_4
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20348_high_4
NF20348_high_4
[»] chr6 (9 HSPs)
chr6 (15-507)||(33468385-33468877)
chr6 (283-499)||(34603936-34604149)
chr6 (283-499)||(34725213-34725426)
chr6 (262-469)||(3045573-3045777)
chr6 (19-69)||(13851738-13851788)
chr6 (15-69)||(19040354-19040408)
chr6 (19-69)||(30866151-30866201)
chr6 (19-60)||(26314641-26314682)
chr6 (20-60)||(15443706-15443746)
[»] chr3 (7 HSPs)
chr3 (262-398)||(38868767-38868903)
chr3 (272-476)||(30865198-30865402)
chr3 (236-381)||(39046713-39046858)
chr3 (19-59)||(39002044-39002084)
chr3 (439-507)||(39046633-39046701)
chr3 (19-69)||(7928452-7928502)
chr3 (19-63)||(27097066-27097110)
[»] chr5 (8 HSPs)
chr5 (18-62)||(35904654-35904698)
chr5 (27-65)||(8420033-8420071)
chr5 (19-69)||(30502395-30502445)
chr5 (19-69)||(30542738-30542788)
chr5 (15-69)||(43208277-43208331)
chr5 (19-64)||(30136681-30136726)
chr5 (24-69)||(38749575-38749620)
chr5 (20-68)||(17593730-17593778)
[»] chr7 (2 HSPs)
chr7 (25-65)||(13427322-13427362)
chr7 (19-69)||(42720897-42720947)
[»] chr8 (2 HSPs)
chr8 (24-69)||(4611536-4611581)
chr8 (13-69)||(20785466-20785522)
[»] chr2 (1 HSPs)
chr2 (24-69)||(28677911-28677956)
[»] chr1 (2 HSPs)
chr1 (24-69)||(6427352-6427397)
chr1 (25-69)||(398778-398822)
[»] chr4 (1 HSPs)
chr4 (17-69)||(3712514-3712566)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 33468385 - 33468877
Alignment:
Q  15 cacagacatatataattacattgaattaagttattttttcaaattactagcggtggtcacgtcagtgtccgtgcccgattgcttcatggtttagttgaga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||| ||||||||||||    
T  33468385 cacagacatatataattacattgaattaagttattttttcaaattattagcggtgtgcgcgtcagtgtccgtgcccgattgcttcatagtttagttgaga 33468484  T
Q  115 acaggcaaaagagtttgaccacgacatnnnnnnnngcagacagacgcgtatgcaaggataatgtatataatatnnnnnnnnnnntgtcaacatatgtgaa 214  Q
    |||||||||||||||||||||||||||        |||||||||||| |||||||||||| ||||||||||||           |||||| |||||||||    
T  33468485 acaggcaaaagagtttgaccacgacataaaaaaaagcagacagacgcatatgcaaggatagtgtatataatataaaaaaaaaaatgtcaatatatgtgaa 33468584  T
Q  215 gtgcatgaatcataaaaacaactactaaccagtcctatgacctccttgttgttcatcatcattgattggaattggaagtgtgatacgataatgcctcatg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  33468585 gtgcatgaatcataaaaacaactactaaccagtcctatgacctccttgttgttcatcatcattgattggaattgaaagtgtgatacgataatgcttcatg 33468684  T
Q  315 tagttgttgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33468685 tagttgttgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattttttaactggaagtctggtgattcgatgattat 33468784  T
Q  415 tatccatccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33468785 tatccatccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaa 33468877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 283 - 499
Target Start/End: Complemental strand, 34604149 - 34603936
Alignment:
Q  283 gaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattt 382  Q
    ||||||||||||||||||||  || | ||||||||  ||||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| ||||||| ||    
T  34604149 gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt 34604050  T
Q  383 tttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatga 482  Q
    || |||||||||||||||||||||||||| |||   ||||  |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  34604049 ttgaactggaagtctggtgattcgatgatcatt---catcagggtcttaaaagcatctatgtcttttataaactcttcatactcttccctcttaccatga 34603953  T
Q  483 aacacagtttttacttc 499  Q
    ||||||| |||||||||    
T  34603952 aacacagattttacttc 34603936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 283 - 499
Target Start/End: Complemental strand, 34725426 - 34725213
Alignment:
Q  283 gaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctttctttgaattt 382  Q
    ||||||||||||||||||||  || | ||||||||  ||||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| ||||||| ||    
T  34725426 gaattggaagtgtgatacgacgatccttcatgtaggcgttgaatccaaaaattaaacgattatgccctttaagtaactttttcatccttcctttgaaatt 34725327  T
Q  383 tttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctctcttaccatga 482  Q
    || |||||||||||||||||||||||||| |||   ||||  |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  34725326 ttgaactggaagtctggtgattcgatgatcatt---catcagggtcttaaaagcatctatgtcttttataaactcttcatactcttccctcttaccatga 34725230  T
Q  483 aacacagtttttacttc 499  Q
    ||||||| |||||||||    
T  34725229 aacacagattttacttc 34725213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 469
Target Start/End: Complemental strand, 3045777 - 3045573
Alignment:
Q  262 gttgttcatcatcattgattggaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctt 361  Q
    |||||| || ||||| || ||||||||| ||| |||| ||| ||||| ||||||||   |||||||| ||||| ||||  ||||||| |||||||||||     
T  3045777 gttgttgattatcatcgactggaattggtagtctgattcgacaatgcttcatgtaggcattgaatcctaaaattaaatatttatgccctttaagtacctc 3045678  T
Q  362 attcatcctttctttgaattttttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttca 461  Q
     |||| |||||||||||| | || ||||||||||     |||| |||||| ||  | ||| |||||||| ||| ||| |||| ||||||||||||| |||    
T  3045677 gttcaccctttctttgaactcttgaactggaagt---acgattggatgatgatccttcatgcaggtcttgaaatcatctatggcttttataaactcatca 3045581  T
Q  462 tacttttc 469  Q
    ||||||||    
T  3045580 tacttttc 3045573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 13851788 - 13851738
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||| ||||||| |||||||| |||||||| ||||||||    
T  13851788 gacacatataattacactgaattacgttattttctcaaattattagcggtg 13851738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 19040408 - 19040354
Alignment:
Q  15 cacagacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||||||| ||||||||||| ||||||| || ||||| |||||||| ||||||||    
T  19040408 cacagacacatataattacactgaattatgtgattttctcaaattattagcggtg 19040354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30866151 - 30866201
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||||||||||| || ||||| |||||||| ||||||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattattagcggtg 30866201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 26314641 - 26314682
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaatta 60  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  26314641 gacatatataattacattgaattatatgattttttcaaatta 26314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 15443746 - 15443706
Alignment:
Q  20 acatatataattacattgaattaagttattttttcaaatta 60  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  15443746 acatatataattatattgaattatgttattttctcaaatta 15443706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 262 - 398
Target Start/End: Original strand, 38868767 - 38868903
Alignment:
Q  262 gttgttcatcatcattgattggaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtacctt 361  Q
    |||||||||||| || |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||   |||||| |||||| ||||     
T  38868767 gttgttcatcatgatggattggaattggaagtctgattcgataatgcctcatgtagtagttgaatcccaaaattaaatacatatgccctttaaggacctc 38868866  T
Q  362 attcatcctttctttgaattttttaactggaagtctg 398  Q
    ||||| | ||| |||||||| || |||||||||||||    
T  38868867 attcaccatttgtttgaattcttgaactggaagtctg 38868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 476
Target Start/End: Original strand, 30865198 - 30865402
Alignment:
Q  272 atcattgattggaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatcaaatgattatgccttttaagtaccttattcatcctt 371  Q
    ||||| || ||| ||||| ||| |||| ||||||||| |||||||| ||||||||||||| || ||||| || || | ||| ||||| | ||||| | ||    
T  30865198 atcatcgactgggattggcagtctgattcgataatgcttcatgtaggtgttgaatcccaagattaaatgtttctggcctttgagtacatcattcaccttt 30865297  T
Q  372 tctttgaattttttaactggaagtctggtgattcgatgattattatccatccaggtcttaaaagcatgtatgtcttttataaactcttcatacttttctc 471  Q
    | || ||||| || |||||||||| || ||||| |||||| ||| | ||| |||||||| ||| ||| ||||||||| |||||| | ||||||||| | |    
T  30865298 tgttagaattcttgaactggaagtatgatgatttgatgatcattcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatactttccac 30865397  T
Q  472 tctta 476  Q
    |||||    
T  30865398 tctta 30865402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 381
Target Start/End: Complemental strand, 39046858 - 39046713
Alignment:
Q  236 ctactaaccagtcctatgacctccttgttgttcatcatcattgattggaattggaagtgtgatacgataatgcctcatgtagttgttgaatcccaaaatc 335  Q
    ||||||||||||  ||||||||  | |  |||||||||||| |||||||||||||||| ||||   || |||| ||||||||  ||||||||| || ||     
T  39046858 ctactaaccagttttatgacctattcgccgttcatcatcatcgattggaattggaagtctgattgcatgatgcttcatgtaggagttgaatcctaatatt 39046759  T
Q  336 aaatgattatgccttttaagtaccttattcatcctttctttgaatt 381  Q
    ||||||||||||| |  ||||||||||||||| |||| ||||||||    
T  39046758 aaatgattatgccctagaagtaccttattcattctttgtttgaatt 39046713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 39002084 - 39002044
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaatt 59  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  39002084 gacatatataattacattgaattatgtgattttttcaaatt 39002044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 507
Target Start/End: Complemental strand, 39046701 - 39046633
Alignment:
Q  439 gtatgtcttttataaactcttcatacttttctctcttaccatgaaacacagtttttacttcatggagaa 507  Q
    |||| |||||||||||||| ||| ||| ||  |||||||||||||| | || |||||||||||||||||    
T  39046701 gtatctcttttataaactcatcacactctttcctcttaccatgaaataaagcttttacttcatggagaa 39046633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 7928502 - 7928452
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  7928502 gacacatataattacactgaattatgtgattttttcaaattattagcggtg 7928452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 27097066 - 27097110
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattacta 63  Q
    |||||||||||||| ||||||||| || ||||| |||||||||||    
T  27097066 gacatatataattaaattgaattatgtaattttctcaaattacta 27097110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 35904698 - 35904654
Alignment:
Q  18 agacatatataattacattgaattaagttattttttcaaattact 62  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  35904698 agacacatataattacactgaattaagttattttttcaaattact 35904654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 8420071 - 8420033
Alignment:
Q  27 taattacattgaattaagttattttttcaaattactagc 65  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  8420071 taattacattgaattatgttattttttcaaattattagc 8420033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30502395 - 30502445
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  30502395 gacacatataattacactgaattaagtgattttctcaaattattagcggtg 30502445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30542738 - 30542788
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  30542738 gacacatataattacactgaattaagtgattttctcaaattattagcggtg 30542788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 43208277 - 43208331
Alignment:
Q  15 cacagacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||||||| |||| |||||||||||||| || ||||| ||||||||||| |||||    
T  43208277 cacagacagatatgattacattgaattatgtcattttctcaaattactatcggtg 43208331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 30136681 - 30136726
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactag 64  Q
    ||||| |||||||||||||||||| || ||||||| ||||||||||    
T  30136681 gacatttataattacattgaattacgtaattttttaaaattactag 30136726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 38749575 - 38749620
Alignment:
Q  24 atataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    ||||||||||||||||||| || |||||||||||||| || |||||    
T  38749575 atataattacattgaattatgtcattttttcaaattattatcggtg 38749620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 17593730 - 17593778
Alignment:
Q  20 acatatataattacattgaattaagttattttttcaaattactagcggt 68  Q
    ||||||||||||||| ||||||| || ||||| |||||||| |||||||    
T  17593730 acatatataattacactgaattacgtgattttctcaaattattagcggt 17593778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 13427362 - 13427322
Alignment:
Q  25 tataattacattgaattaagttattttttcaaattactagc 65  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  13427362 tataattatattgaattaagtgattttttcaaattactagc 13427322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 42720897 - 42720947
Alignment:
Q  19 gacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||| ||||||||||||| ||||| || |||||||||||||| ||||||||    
T  42720897 gacacatataattacatttaattatgtgattttttcaaattattagcggtg 42720947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 4611581 - 4611536
Alignment:
Q  24 atataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    ||||||||||| ||||||| |||||||| |||||||| ||||||||    
T  4611581 atataattacactgaattatgttattttctcaaattattagcggtg 4611536  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 20785466 - 20785522
Alignment:
Q  13 agcacagacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||||||||| ||||||||||||| ||||| || ||||  |||||||| ||||||||    
T  20785466 agcacagacacatataattacattaaattatgtgatttcctcaaattattagcggtg 20785522  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 28677956 - 28677911
Alignment:
Q  24 atataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  28677956 atataattacactgaattatgtgattttttcaaattattagcggtg 28677911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6427397 - 6427352
Alignment:
Q  24 atataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtg 6427352  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 398778 - 398822
Alignment:
Q  25 tataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||||||||| ||||||| || |||||||||||||| ||||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtg 398822  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 3712514 - 3712566
Alignment:
Q  17 cagacatatataattacattgaattaagttattttttcaaattactagcggtg 69  Q
    |||||| |||||||||||||||||||  | ||||| |||||||| ||||||||    
T  3712514 cagacacatataattacattgaattacatgattttctcaaattattagcggtg 3712566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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