View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_5 (Length: 408)
Name: NF20348_high_5
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 41554915 - 41555092
Alignment:
| Q |
15 |
caaaagtattattgaatcaaatgacataattgcaagttaagaagaatgaacgagaagcacttgttgtccatatatgtatggattggttgattgagtttgt |
114 |
Q |
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| T |
41554915 |
caaaagtattattgaatcaaatgacataattgcaagttaagaagaatggacgagaagcacttgttgtccatatatgtatggattggttgattgagtttct |
41555014 |
T |
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| Q |
115 |
gtagaatgttcttaccc-aaacataccttaatacagacgtaaccttaacaaagac----acaagtaaggtaccacatc |
187 |
Q |
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| T |
41555015 |
gtagaatattcttacccaaaacataccttaatacagacgtaaccttaacaaagacataaataagtaaggtaccacatc |
41555092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 41555127 - 41555184
Alignment:
| Q |
260 |
tcgttttactaacattagcggataattttaaatcaaattcttatttatctatcaataa |
317 |
Q |
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| T |
41555127 |
tcgttttactaacattagcggataattttaaatcaaattcttatttatctatcaataa |
41555184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 41555224 - 41555285
Alignment:
| Q |
335 |
taggtaaatgtcacttatctgagtttacataaattaaaaccatttatatttgtctttcactt |
396 |
Q |
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| T |
41555224 |
taggtagatgtcacttatctgagtttacataaattaaaaccatttatatttgtctttcactt |
41555285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 41555078 - 41555114
Alignment:
| Q |
209 |
gtaaggtaccacatctgtcattaaatatgaaacactt |
245 |
Q |
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| T |
41555078 |
gtaaggtaccacatccgttattaaatatgaaacactt |
41555114 |
T |
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