View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_high_6 (Length: 393)
Name: NF20348_high_6
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 50531510 - 50531903
Alignment:
| Q |
1 |
ttcatttacgaaagaggtcattaattagattgttgtcaaatgtcacataacaacacgtctttgtacacacaaagaaaataagctagtgtatattctcaag |
100 |
Q |
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| T |
50531510 |
ttcatgtacgaaagaggtccttaattagattgttgtcaaacgtcacataacaacacgtcgttgtacacacaaagaaaataagctagtgtatattctcaag |
50531609 |
T |
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| Q |
101 |
attttaagcttattttaaaataggtttccagatccagtaaagttcacataaagttactctttgctcttaagagcaaaaaggagataaaacaatttatttc |
200 |
Q |
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| T |
50531610 |
attttaagcttattttaaaataggtttccagatccagtaaagttcacgtaaagttactctttgctcttaagagcaaaaaggagataaaacaatttatttc |
50531709 |
T |
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| Q |
201 |
tt-nnnnnnnnnnnncttactacgcgtgaaatcccgaatggatgcaaaaaagattgtatatagtacagaaatgcatatgatcataaagttaaaggtataa |
299 |
Q |
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| T |
50531710 |
ttaaaaaaagaaaaacttactacgcgtgaaatcccgaatggatgcaaaaaagattgtatatagtacagaaatgcatatgatcataaagttaaaggtataa |
50531809 |
T |
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| Q |
300 |
gaaaacgacaaaaaatacggaagagtatattaatgatatgtaacgtcatgaaaaggatggctaggaggagaagagaagagaagaggatattgaa |
393 |
Q |
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| T |
50531810 |
gaaaacgacaaaaaatacggaagagtatattaatgatatgtaacgtcatgaaaaggatggctaggaggagaagagaagagaagaggatattgaa |
50531903 |
T |
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