View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20348_high_7 (Length: 370)
Name: NF20348_high_7
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 6014005 - 6013691
Alignment:
| Q |
19 |
gtggtgtggtagaaattaaggttgagaatttgaaaagaggtgaatggtttttgggtgtgtggaagattaaggaaagttttgaagatacgttcatttgtgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6014005 |
gtggtgtggtagaaattaaggttgagaatttgaaaagaggtgaatggtttttgggtgtgtggaagattaaggaaagttttgaagatacgttcatttgtgt |
6013906 |
T |
|
| Q |
119 |
cagctgctctgtttcagaacacacgaagtggcaggcaactgaggaaattgaattacctcaaaaaataaggtttaagtttaaggaaccaaactaaggaatc |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6013905 |
cagttgctctgtttcagaacacacgaagtggcaggcaacagaggaaattgaattacctcaaaaaataaggtttaagtttaaggaaccaaactaaggaatc |
6013806 |
T |
|
| Q |
219 |
aacaaataaacccaaaattttaacaaccaacggggtttaacaaagactactagtttggagagaattttttatgatcgaatccggatagaggttttaatct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
6013805 |
aacaaataaacccaaaattttaacaaccaacggggtttaacaaagactactagtttggagataattttttctgatcgaattcggatagaggttttaatct |
6013706 |
T |
|
| Q |
319 |
aaccactgacatttt |
333 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
6013705 |
aaccagtgacatttt |
6013691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University