View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_1 (Length: 901)
Name: NF20348_low_1
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 16 - 701
Target Start/End: Original strand, 44621459 - 44622147
Alignment:
| Q |
16 |
ataaaaatgcaagaagcggtaaaattaaattgctttcggagtaaatattgttggatcatcaatccaacattggacttgtattttaaaaatcatgtgtgta |
115 |
Q |
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| T |
44621459 |
ataaaaatgcaagaagcggtaaaattaaattgctttcggagtaaatattgttggatcatcaatccaacattggacttgtattttaaaaatcatgtgtgtc |
44621558 |
T |
|
| Q |
116 |
gactgccacttaagttgaagtccaattaaaagtgatctaaaaaggtttggttaatatgggcttataagtatctaatagggtgtgggccagggttctatat |
215 |
Q |
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| T |
44621559 |
gactgccacttaagttgaagtccaattaaaagtgattta----ggtttggttaatatgggcttataagtatctaatagggtgtgggccagggttctatat |
44621654 |
T |
|
| Q |
216 |
agagagagaagttatggtctccagatcacgcgtgcttgcagctgttattttttgactacctatatcagaagaagatagagaaataattaagggttttttc |
315 |
Q |
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| T |
44621655 |
agagagagaagttatggtctccagatcacgcgtgcttgcagctgttattttttgactacctatatcagaagaagatagagaaataattaagggttctttc |
44621754 |
T |
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| Q |
316 |
agagagaatgtgtgttgatctggaaggccaaaaccaccaaatatttgttcattatgaattcaa--------ccgcatattattctgattattatcatgat |
407 |
Q |
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| T |
44621755 |
agagagaatgtgtgttgatctggaaggcc-aaaccaccaaatatttgttcatcatgaattcaagtacgcctccgcatattattctgattattaacatgat |
44621853 |
T |
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| Q |
408 |
tgattttggttccaacaaatatttctccttaacagttactgcattaaagtggttctaactaccattgctggatgaatcaaaacacacataatgctactat |
507 |
Q |
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| T |
44621854 |
tgattttggttccaacaaatatttctccttaacagttactgcattaaagtggttctaactactattgctggatgaatcaaaacacacataatgctactat |
44621953 |
T |
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| Q |
508 |
ttgatagagttatacaaatttccgccatatcattgttctattctttcactttgcaaaatctgaagctgacaaaagtcgcaaagacaaatttcatgcatca |
607 |
Q |
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| T |
44621954 |
ttgatagagttatacaaatttccgccatatcattgttctattctttcactttgcaaaatctgaagctgacaaaagtcgcaaagacaaatttcatgcatca |
44622053 |
T |
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| Q |
608 |
agtgcatagagagactacagaataacaaagcctggaacaactactactcaaacatgattagttcattttctgaatattgaaacttgaagtattg |
701 |
Q |
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| T |
44622054 |
agtgcatagagagactacagaataacaaagcctggaacaactcctactcaaacatgattagttcattttctgaatattgaaacttgaagtattg |
44622147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 707 - 885
Target Start/End: Original strand, 44622179 - 44622357
Alignment:
| Q |
707 |
tcaaaaggaaaataaataaataacaggaagtggcatgcctgtgcatcagttatacgtctaagaggagaaccaccaccaattgaagcgtagccttctctgc |
806 |
Q |
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| T |
44622179 |
tcaaaaggaaaataaataaataacaggaagtggcatgcctgtgcatcagttatacgtctaagaggagaaccaccaccaattgaagcgtagccttctctgc |
44622278 |
T |
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| Q |
807 |
tctttggggcccttagaacagatacaaactgggccaatggcttttgaagaaaactaaatattcttggcaatcgtataat |
885 |
Q |
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| T |
44622279 |
tctttggggcccttagaacagatacaaactgggccaatggcttttgaagaaaactaaatattcttggcaatcgtataat |
44622357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 730 - 882
Target Start/End: Original strand, 39877708 - 39877860
Alignment:
| Q |
730 |
caggaagtggcatgcctgtgcatcagttatacgtctaagaggagaaccaccaccaattgaagcgtagccttctctgctctttggggcccttagaacagat |
829 |
Q |
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||||||||| |||||||||||||| || |||||||||||||| || ||||||||||| ||||| ||||||||| |||||||||| || |||| ||||||| |
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| T |
39877708 |
caggaagtgtcatgcctgtgcatcggtcatacgtctaagaggggatccaccaccaatggaagcatagccttctttgctctttggtgctcttaaaacagat |
39877807 |
T |
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| Q |
830 |
acaaactgggccaatggcttttgaagaaaactaaatattcttggcaatcgtat |
882 |
Q |
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||||| || |||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
39877808 |
acaaattgagccagtggcttttgaagaaaactaaataaccttggtaatcgtat |
39877860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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