View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20348_low_10 (Length: 358)

Name: NF20348_low_10
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20348_low_10
NF20348_low_10
[»] chr7 (3 HSPs)
chr7 (1-342)||(27222312-27222653)
chr7 (276-312)||(6689261-6689297)
chr7 (23-74)||(21914944-21914995)
[»] chr8 (1 HSPs)
chr8 (87-214)||(17747151-17747278)
[»] scaffold0636 (1 HSPs)
scaffold0636 (69-183)||(6503-6616)
[»] chr3 (2 HSPs)
chr3 (110-202)||(21022387-21022480)
chr3 (72-129)||(33385489-33385546)
[»] chr1 (4 HSPs)
chr1 (169-214)||(10014548-10014593)
chr1 (72-193)||(10916116-10916237)
chr1 (73-183)||(12086446-12086555)
chr1 (84-202)||(35402456-35402574)
[»] chr6 (3 HSPs)
chr6 (154-193)||(17552878-17552917)
chr6 (276-312)||(799529-799565)
chr6 (276-312)||(8270262-8270298)
[»] chr4 (2 HSPs)
chr4 (76-202)||(25228807-25228934)
chr4 (217-271)||(11906222-11906276)
[»] chr5 (1 HSPs)
chr5 (276-312)||(19941206-19941242)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 27222653 - 27222312
Alignment:
Q  1 ctgatatgcaatatgaagtaattctgatgtctattatgaagttctttttaattgaagagttttgttattgagatcaacttctgatctcatatttccttgg 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27222653 ctgatatgcaatatgaagtaattctgatgtctgttatgaagttctttttaattgaagacttttgttattgagatcaacttctgatctcatatttccttgg 27222554  T
Q  101 taaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttcttagcactttgtgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27222553 taaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttcttagcactttgtgttg 27222454  T
Q  201 ttgagagtcatgttattgaaccactattctttagaacacctccctatacaaattggcaacactaaccaatttttgtactatttatgtgaatagtactttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27222453 ttgagagtcatgttattgaaccactattctttagaacacctccctgaacaaattggcaacactaaccaatttttgtactatttatgtgaatagtactttt 27222354  T
Q  301 gccaaaaattaatagatatactgaatcagacattatgatacc 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27222353 gccaaaaattaatagatatactgaatcagacattatgatacc 27222312  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 6689297 - 6689261
Alignment:
Q  276 tactatttatgtgaatagtacttttgccaaaaattaa 312  Q
    ||||||| |||||||||||||||||||||||||||||    
T  6689297 tactattcatgtgaatagtacttttgccaaaaattaa 6689261  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 21914944 - 21914995
Alignment:
Q  23 tctgatgtctattatgaagttctttttaattgaagagttttgttattgagat 74  Q
    |||||||| || ||||||||||||||| |||||||| |||||||||| ||||    
T  21914944 tctgatgtttaatatgaagttcttttttattgaagaattttgttattaagat 21914995  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 17747278 - 17747151
Alignment:
Q  87 tcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtccttctt 186  Q
    |||||||  ||| |||||| |||||||||||| ||||| ||| ||||||||| |||||| || ||| |||||| ||||||||  || ||  |||||||||    
T  17747278 tcatattaactttgtaaatattgttcttcaattttgtaatgcccatgagatgcttctgatctcattttgaagtgcttttgatttttatgttgtccttctt 17747179  T
Q  187 agcactttgtgttgttgagagtcatgtt 214  Q
    ||||||| ||| | || ||| |||||||    
T  17747178 agcacttggtgctattaagattcatgtt 17747151  T

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Target: scaffold0636 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 6616 - 6503
Alignment:
Q  69 tgagatcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgat 168  Q
    ||||||| |||| ||||||| ||||| |||||| ||| |||||||||||| | || |||  |||||||| ||| ||| || ||||||| || ||||||||    
T  6616 tgagatctacttttgatctcctattttcttggtcaatcttgttcttcaatct-gttgtgatcatgagataattatgatctcattatgatgttcttttgat 6518  T
Q  169 cattctgaagtcctt 183  Q
    |||| ||||||||||    
T  6517 cattttgaagtcctt 6503  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 21022480 - 21022387
Alignment:
Q  110 ttcttcaatattgtagtgcacatgagat-gattctgagctaattatgaagtccttttgatcattctgaagtccttcttagcactttgtgttgtt 202  Q
    ||||||||| || ||||||| ||||||| | |||||| || ||| |||||| ||| |||||||| |||||||||||| | ||||| ||||||||    
T  21022480 ttcttcaattttctagtgcatatgagattgtttctgatctcattctgaagtacttctgatcattttgaagtccttctcaacacttggtgttgtt 21022387  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 33385546 - 33385489
Alignment:
Q  72 gatcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgca 129  Q
    ||||||||||||||||||||||| |||  | | | |||||||||||||||||||||||    
T  33385546 gatcaacttctgatctcatattttcttaatgagtcttgttcttcaatattgtagtgca 33385489  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 10014548 - 10014593
Alignment:
Q  169 cattctgaagtccttcttagcactttgtgttgttgagagtcatgtt 214  Q
    |||||| |||||||||||||||||| |||||||||||| |||||||    
T  10014548 cattcttaagtccttcttagcacttggtgttgttgagattcatgtt 10014593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 10916237 - 10916116
Alignment:
Q  72 gatcaacttctgatctcatatttccttggtaaattttgttcttcaatatt-gtagtgcacatgagatgattctgagctaattatgaagtccttttgatca 170  Q
    ||||||||||  |||||||||| ||| ||| |||  ||||||||||| || | ||||  ||||||||| || ||| |||||| | |||| ||| ||||||    
T  10916237 gatcaacttcgaatctcatatt-cctcggtcaatcatgttcttcaatttttgcagtgaccatgagatgcttatgatctaattctaaagttcttctgatca 10916139  T
Q  171 ttctgaagtccttcttagcactt 193  Q
     |||||||| |||||||||||||    
T  10916138 atctgaagttcttcttagcactt 10916116  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 12086446 - 12086555
Alignment:
Q  73 atcaacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcatt 172  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||| || ||| || ||  || || |||| | || ||||||||| |||| ||||| ||    
T  12086446 atcagcttctgatctcatatt-ccttgatcaattttgttcttcaattttctagagctcagaagttgcttctaatctcattatgaagcccttctgatcgtt 12086544  T
Q  173 ctgaagtcctt 183  Q
     ||||||||||    
T  12086545 ttgaagtcctt 12086555  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 35402456 - 35402574
Alignment:
Q  84 atctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctgaagtcctt 183  Q
    |||||||||||||||  | ||| |||||||||||| ||||||| |   ||||| |||||| | ||  || |||||| ||| || ||||| | ||||||||    
T  35402456 atctcatatttccttattcaatcttgttcttcaattttgtagtacctttgagacgattctaatctcgttttgaagtacttctggtcattataaagtcctt 35402555  T
Q  184 cttagcactttgtgttgtt 202  Q
    ||||||||||  |||||||    
T  35402556 cttagcacttgatgttgtt 35402574  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 17552917 - 17552878
Alignment:
Q  154 tgaagtccttttgatcattctgaagtccttcttagcactt 193  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  17552917 tgaagtccttgtgatcattctaaagtccttcttagcactt 17552878  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 799529 - 799565
Alignment:
Q  276 tactatttatgtgaatagtacttttgccaaaaattaa 312  Q
    ||||||| | |||||||||||||||||||||||||||    
T  799529 tactattcacgtgaatagtacttttgccaaaaattaa 799565  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 8270298 - 8270262
Alignment:
Q  276 tactatttatgtgaatagtacttttgccaaaaattaa 312  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8270298 tactattcacgtgaatagtacttttgccaaaaattaa 8270262  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 25228934 - 25228807
Alignment:
Q  76 aacttctgatctcatatttccttggtaaattttgttcttcaatattgtagtgcacatgagatgattctgagctaattatgaagtccttttgatcattctg 175  Q
    ||||| |||||||| |||||||| || ||| || ||||||||| || | |||| ||||||||| || ||| || ||| | |||  ||| ||||| || ||    
T  25228934 aacttatgatctcacatttccttagtcaatatttttcttcaattttctcgtgcccatgagatgcttttgatctcattctcaagagcttatgatctttttg 25228835  T
Q  176 aagtcctt-cttagcactttgtgttgtt 202  Q
    |||||||| || ||||||||||||||||    
T  25228834 aagtcctttctaagcactttgtgttgtt 25228807  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 11906222 - 11906276
Alignment:
Q  217 tgaaccactattctttagaacacctccctatacaaattggcaacactaaccaatt 271  Q
    ||||||||||| ||||||||||||||| |  ||||||||| |||||| |||||||    
T  11906222 tgaaccactatgctttagaacacctccgtgaacaaattggtaacactgaccaatt 11906276  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 19941242 - 19941206
Alignment:
Q  276 tactatttatgtgaatagtacttttgccaaaaattaa 312  Q
    ||||||| | |||||||||||||||||||||||||||    
T  19941242 tactattcacgtgaatagtacttttgccaaaaattaa 19941206  T

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