View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_12 (Length: 352)
Name: NF20348_low_12
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 32703990 - 32704313
Alignment:
| Q |
15 |
aaatgaaaataatataaaatatgtctcaaaccatgagcaaataatctaaaaatcctctgaattgtcttcaaatgcttattgaaaatgacctacaaacatg |
114 |
Q |
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| T |
32703990 |
aaatgaaaataatacaaaatatgtcttaaaccatgagcaaataatctaaaaatcctatgaattgtcttcaaatgcttattaaaaatgacctacaaacata |
32704089 |
T |
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| Q |
115 |
tctaaacatcatacaatgaggtattaccaatcctcttggtattatggtcaatcatcatactcctcgtcacccactttaggaagtcaactgatgcaactat |
214 |
Q |
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|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32704090 |
tctaaacatcatacgatgaggtgttaccgatcctcttggtattatggtcaatcatcatactcctcgtcacccactttaggaagtcaactgatgcaactat |
32704189 |
T |
|
| Q |
215 |
attttcgtaatcgactatctctggacaagttggaaaattagagacattttcac-tattagttatgggtcat-atcacatagcattggtgtgtattaataa |
312 |
Q |
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||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
32704190 |
atttttgtactcgactatctctggacaagttggaatattagagacattttcacttattagttatgggtcatgatcacatagcattg--gtgtattaataa |
32704287 |
T |
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| Q |
313 |
tatttgtatggacatccattgtttct |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32704288 |
tatttgtatggacatccattgtttct |
32704313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 33559971 - 33559919
Alignment:
| Q |
42 |
aaaccatgagcaaataatctaaaaatcctctgaattgtcttcaaatgcttatt |
94 |
Q |
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||||||||||||||| |||||||| |||| | |||||| || ||||||||||| |
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| T |
33559971 |
aaaccatgagcaaatcatctaaaactcctataaattgtttttaaatgcttatt |
33559919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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