View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_13 (Length: 344)
Name: NF20348_low_13
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 14599423 - 14599099
Alignment:
| Q |
4 |
atgaaactaacaagattacaaaataatacaaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcctg |
103 |
Q |
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| T |
14599423 |
atgaaactaacaagattacaaaataataccaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcccg |
14599324 |
T |
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| Q |
104 |
gatgtaaggagccatacaaagtaggagaatacgagaacgatggccaggattattcaaatggagcattgcaattacaaggaccaaacggttcccaaagaaa |
203 |
Q |
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| T |
14599323 |
gatgtaaggagccattcaaagtaggagaatacgagaacgatggccaggattattcaaatggagcattgcaattacaaggaccaaacggttccaaaagaaa |
14599224 |
T |
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| Q |
204 |
tcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgag |
303 |
Q |
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| T |
14599223 |
tcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctccagatgattcagatgatgag |
14599124 |
T |
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| Q |
304 |
gctggtctaaatgaaggagtatttg |
328 |
Q |
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| T |
14599123 |
gctggtctaaatgaaggagtatttg |
14599099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 14609286 - 14609374
Alignment:
| Q |
199 |
agaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctccaga |
287 |
Q |
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| T |
14609286 |
agaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcatattggcctccaga |
14609374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 14609074 - 14609204
Alignment:
| Q |
7 |
aaactaacaagattacaaaataatacaaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcctggat |
106 |
Q |
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| T |
14609074 |
aaactaactagaatatataataataccaattt-atcaggtacaagatttgcagagattgttttatagatgcccaaagcgatactggcatgtgtcccggtt |
14609172 |
T |
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| Q |
107 |
gtaaggagccatacaaagtaggagaatacgag |
138 |
Q |
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| T |
14609173 |
gtagagagccttacaaagtaggagaatacgag |
14609204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 15420619 - 15420556
Alignment:
| Q |
217 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc |
280 |
Q |
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| T |
15420619 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc |
15420556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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