View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20348_low_14 (Length: 343)

Name: NF20348_low_14
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20348_low_14
NF20348_low_14
[»] chr8 (5 HSPs)
chr8 (14-243)||(41657929-41658176)
chr8 (267-327)||(41657816-41657876)
chr8 (125-195)||(10632352-10632422)
chr8 (133-167)||(42662712-42662746)
chr8 (142-187)||(6079639-6079684)
[»] chr3 (2 HSPs)
chr3 (125-186)||(2312989-2313050)
chr3 (125-185)||(34262756-34262816)
[»] chr2 (1 HSPs)
chr2 (136-167)||(15492772-15492803)
[»] chr6 (1 HSPs)
chr6 (125-167)||(2284810-2284852)
[»] chr5 (1 HSPs)
chr5 (128-170)||(42069779-42069821)
[»] chr1 (1 HSPs)
chr1 (133-182)||(38133405-38133454)
[»] chr7 (1 HSPs)
chr7 (138-186)||(20559609-20559657)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 41658176 - 41657929
Alignment:
Q  14 tactagtaagtgttgttcttcttttttggatagatataaatttaaagattatgtactctagatgtaaaataaat-----------ccaccaaatcatatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           | ||||||||||||     
T  41658176 tactagtaagtgttgttcttcttttttggatagatataaatttaaagattatgtactctagatgtaaaataatttaaagatacgtcgaccaaatcatata 41658077  T
Q  103 tagatatattctctctaatcactattatacatcagatacataaattattcaataaatttaaaaaatgataatttgtttataataacaatcgga------- 195  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |           
T  41658076 tagatatattccctctaatcactattatacatcagatacataagttattcaataaatttaaaaaatgataatttatttataataacgatcgtagatcaag 41657977  T
Q  196 gatatatttgtgaacatatttgaaaaatatatataacaagtgacatat 243  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41657976 gatatatttgtgaacatatttgaaaaaaatatataacaagtgacatat 41657929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 41657876 - 41657816
Alignment:
Q  267 gtgacatataatgagattgatgtagctagacacatatgtacgtaaaactttttcacattac 327  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41657876 gtgacatataatgagattgatgtagctagacacatatgtacttaaaactttttcacattac 41657816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 10632422 - 10632352
Alignment:
Q  125 tattatacatcagatacataaattattcaataaatttaaaaaatgataatttgtttataataacaatcgga 195  Q
    ||||||| |||| |||| ||| ||||||||||||| |||||||||| | ||| |||||||||| |||||||    
T  10632422 tattatagatcaaatacttaagttattcaataaatataaaaaatgacattttatttataataataatcgga 10632352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 42662746 - 42662712
Alignment:
Q  133 atcagatacataaattattcaataaatttaaaaaa 167  Q
    ||||||||||| |||||||||||||||||||||||    
T  42662746 atcagatacattaattattcaataaatttaaaaaa 42662712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 6079639 - 6079684
Alignment:
Q  142 ataaattattcaataaatttaaaaaatgataatttgtttataataa 187  Q
    ||||||||||||||||| |||| ||||||| |||| ||||||||||    
T  6079639 ataaattattcaataaacttaacaaatgattatttatttataataa 6079684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 2312989 - 2313050
Alignment:
Q  125 tattatacatcagatacataaattattcaataaatttaaaaaatgataatttgtttataata 186  Q
    ||||||| ||||||||||| ||||||||||| ||||| ||||||||  ||||| ||||||||    
T  2312989 tattatatatcagatacatcaattattcaatgaatttgaaaaatgaatatttgattataata 2313050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 34262756 - 34262816
Alignment:
Q  125 tattatacatcagatacataaattattcaataaatttaaaaaatgataatttgtttataat 185  Q
    ||||||||||||||||||| | | ||| ||| |||||||||||| |||| |||||||||||    
T  34262756 tattatacatcagatacattattaattgaatgaatttaaaaaattataaattgtttataat 34262816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 15492772 - 15492803
Alignment:
Q  136 agatacataaattattcaataaatttaaaaaa 167  Q
    ||||||||||||||||||||||||||||||||    
T  15492772 agatacataaattattcaataaatttaaaaaa 15492803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 2284852 - 2284810
Alignment:
Q  125 tattatacatcagatacataaattattcaataaatttaaaaaa 167  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||    
T  2284852 tattataaatcagatacattaattattcaataaattaaaaaaa 2284810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 42069821 - 42069779
Alignment:
Q  128 tatacatcagatacataaattattcaataaatttaaaaaatga 170  Q
    |||| |||| |||||| ||||||||||||||||||||||||||    
T  42069821 tatagatcaaatacatcaattattcaataaatttaaaaaatga 42069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 38133454 - 38133405
Alignment:
Q  133 atcagatacataaattattcaataaatttaaaaaatgataatttgtttat 182  Q
    ||||||||||| ||||||| ||||||||||||||||  || |||||||||    
T  38133454 atcagatacattaattatttaataaatttaaaaaattgtattttgtttat 38133405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 20559657 - 20559609
Alignment:
Q  138 atacataaattattcaataaatttaaaaaatgataatttgtttataata 186  Q
    |||||| | ||||||||| |||||||||| |||| ||||||||||||||    
T  20559657 atacatcagttattcaatgaatttaaaaagtgattatttgtttataata 20559609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University