View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_18 (Length: 287)
Name: NF20348_low_18
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 7348956 - 7349040
Alignment:
| Q |
48 |
atgccattttagacgagttttgaaatcagcatcctctaacatatcttcaacagt----cttcacatccttcttcgtcatggggaa |
128 |
Q |
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| T |
7348956 |
atgccattttagacgagttttgaaatcagcatcctctaacatatcttcaacagtgtaccttcacatccttcttcgtcatggggaa |
7349040 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 7349083 - 7349126
Alignment:
| Q |
228 |
ggagtgtggatcagtatagagcaagcctaaaacaggcaagttca |
271 |
Q |
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| T |
7349083 |
ggagtgtggatcagtatagagcaagcctaaaacaggcaagttca |
7349126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 7349042 - 7349082
Alignment:
| Q |
152 |
ccataatatccgttggcctaatccccagccacttaaatttt |
192 |
Q |
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| T |
7349042 |
ccataatatcagttggcctaatccccagccacttaaatttt |
7349082 |
T |
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