View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_19 (Length: 259)
Name: NF20348_low_19
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 35928180 - 35928348
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928180 |
atattggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
35928279 |
T |
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| Q |
136 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagttaggtaaatttgtttatcttt |
204 |
Q |
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| T |
35928280 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagttaggtaaatttgtttatcttt |
35928348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 35910788 - 35910924
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910788 |
atatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtg |
35910887 |
T |
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| Q |
136 |
agtttcaaacattatgttgtcagaatcaaagctgtca |
172 |
Q |
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| T |
35910888 |
agtttcaaacattatgttgtcagaatcaaagctgtca |
35910924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 35921586 - 35921733
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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| T |
35921586 |
atatgggttacggtataatgttttgccatcagagttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaaccaggtcctgtg |
35921685 |
T |
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| Q |
136 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt |
183 |
Q |
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| T |
35921686 |
agtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagt |
35921733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 35915215 - 35915361
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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||||||||| ||||||| |||||| || ||||| |||| |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
35915215 |
atatgggttgcggtataatgtttttccatcagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccaggtcctgcg |
35915314 |
T |
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| Q |
136 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagag |
182 |
Q |
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|||||||||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
35915315 |
agtttcaaacattatgttgtcaaaatcgaagctttcaaactcgagag |
35915361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 35940565 - 35940685
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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|||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
35940565 |
atatgggttacggtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaagaacagccaggtcctgtg |
35940664 |
T |
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| Q |
136 |
agtttcaaacattatgttgtc |
156 |
Q |
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| T |
35940665 |
tggttcaaacattatgttgtc |
35940685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 35934996 - 35935152
Alignment:
| Q |
36 |
atatgggttacggtatagtgttttgccgtcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgta |
135 |
Q |
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|||| |||||||||||| |||||| || |||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
35934996 |
atattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggtcctgtg |
35935095 |
T |
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| Q |
136 |
agtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt-taggtaaa |
191 |
Q |
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|||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| |
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| T |
35935096 |
tgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaa |
35935152 |
T |
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