View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_22 (Length: 233)
Name: NF20348_low_22
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 18151158 - 18151366
Alignment:
| Q |
21 |
atgtttatgtatattaccctttttccggtgttgcgtcacataacggaaattttgatacatctcttccctctatctggtggttataatgctttcagctcgc |
120 |
Q |
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| T |
18151158 |
atgtttatgtatattaccctttttccggtgttgcgtcacataacggaaattttaatacatctcttccctctatctggtggttataatgctttcagctcgc |
18151257 |
T |
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| Q |
121 |
acttttggggcacctaggatagtcgttgtggatattgttaaattttcaacaaacattc---------tggtatattgattgaatcagaagttttttaaat |
211 |
Q |
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| T |
18151258 |
acttttggggcacctaggatagtcgttgtggatattgttaaattttcaacaaacattcaggtatattaggtatattgattgaatcagaagttttttaaat |
18151357 |
T |
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| Q |
212 |
cttctatat |
220 |
Q |
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||| ||||| |
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| T |
18151358 |
cttttatat |
18151366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 22993096 - 22993149
Alignment:
| Q |
100 |
gttataatgctttcagctcgcacttttggggcacctaggatagtcgttgtggat |
153 |
Q |
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| T |
22993096 |
gttacaatgctttcggctcgtgcttttggagcacctaggatagtcgttgtggat |
22993149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 23795302 - 23795249
Alignment:
| Q |
100 |
gttataatgctttcagctcgcacttttggggcacctaggatagtcgttgtggat |
153 |
Q |
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| T |
23795302 |
gttacaatgctttcggctcgtgcttttggagcacctaggatagtcgttgtggat |
23795249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 22993195 - 22993233
Alignment:
| Q |
151 |
gatattgttaaattttcaacaaacattctggtatattga |
189 |
Q |
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| T |
22993195 |
gatattgttaaagtttcaacaaacattcaggtatattga |
22993233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 23795203 - 23795165
Alignment:
| Q |
151 |
gatattgttaaattttcaacaaacattctggtatattga |
189 |
Q |
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| T |
23795203 |
gatattgttaaagtttcaacaaacattcaggtatattga |
23795165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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