View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_24 (Length: 207)
Name: NF20348_low_24
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_24 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 9749 - 9927
Alignment:
| Q |
13 |
gcacagaacaccgaaactccatctctggcttaagggacggataccatttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcattgca |
112 |
Q |
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| T |
9749 |
gcacaaaacaccgaaactccatctctggcttaagggacggataccatttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcattgca |
9848 |
T |
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| Q |
113 |
ggaatcataagcatgacacaagtcgtggactaatgagtcggatgatcggaacagaagtgcaatctcactgaaagtagtg |
191 |
Q |
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| T |
9849 |
ggaatcataagcatgacacaagtcgtggactaatgagtcggatgatcggaacagaagtgcaatctcactgaaagtagtg |
9927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 2407192 - 2407370
Alignment:
| Q |
13 |
gcacagaacaccgaaactccatctctggcttaagggacggataccatttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcattgca |
112 |
Q |
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| T |
2407192 |
gcacaaaacaccgaaactccatctctggcttaagggacggataccatttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcatcgca |
2407291 |
T |
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| Q |
113 |
ggaatcataagcatgacacaagtcgtggactaatgagtcggatgatcggaacagaagtgcaatctcactgaaagtagtg |
191 |
Q |
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| T |
2407292 |
ggaatcataagcatgacacaagtcgtggactaatgagtcggatgatcggaacagaagtgcaatctcactgaaagtagtg |
2407370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 21478149 - 21478295
Alignment:
| Q |
19 |
aacaccgaaactccatctctggcttaagggacggataccatttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcattgcaggaatc |
118 |
Q |
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| T |
21478149 |
aacaacgaaactccatgtctggcttaagggatggataccatttacggagagcaagaaagaaattctggggtcgagatgtaattttatcgtggcaagaatc |
21478248 |
T |
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| Q |
119 |
ataagcatgacacaagtcgtggactaatgagtcggatgatcggaaca |
165 |
Q |
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| T |
21478249 |
ataagcatggcacaagtcatggactaatgagtcggatgctcggaaca |
21478295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 30597905 - 30598076
Alignment:
| Q |
26 |
aaactccatctctggcttaagggacggataccat--------ttacgcagagcaaggaagaaattatgaggtctagatgaagatttatcattgcaggaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||||||||||||||||||| ||| || | |
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| T |
30597905 |
aaactccatctctggcttaagggacggataccatattatcatttacgtataataaggaagaaattatgcggtctagatgaagatttatcatggcaagagt |
30598004 |
T |
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| Q |
118 |
cataagcatga--cacaagtcgtggactaatgagtcggatgatcggaacagaagtgcaatctcactgaaagt |
187 |
Q |
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| T |
30598005 |
cattagcataaggcacaagtcatggactaatgagttggatgcttggaaaagaagtgcaatctcactgaaagt |
30598076 |
T |
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