View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_26 (Length: 206)
Name: NF20348_low_26
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 20735969 - 20735827
Alignment:
| Q |
49 |
ttgcaacatcaaaagctccccaatcttgaaagggattgttccatcaagtaaattgtctcgaagatcaagaagctgcagcagtgcaagatttccaagttga |
148 |
Q |
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| T |
20735969 |
ttgcaacatcaaaagctccccaatcttgaaagggattgttctatcaagtaaattgtctccaagatcaagaaactgcagttgtgcaagatttccaagttga |
20735870 |
T |
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| Q |
149 |
caagggattgctcctgaaatagaatttcctccaaggttaagat |
191 |
Q |
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| T |
20735869 |
taagggattgctcctgaaagagaatttcctccaaggttaagat |
20735827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 20761373 - 20761515
Alignment:
| Q |
49 |
ttgcaacatcaaaagctccccaatcttgaaagggattgttccatcaagtaaattgtctcgaagatcaagaagctgcagcagtgcaagatttccaagttga |
148 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
20761373 |
ttgcaccatcaaaagctccccaatcttgaaagggattgttccatcaagtaaattgtctccgagatcaagaaactgcagttgtgcaagatttccaagttga |
20761472 |
T |
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| Q |
149 |
caagggattgctcctgaaatagaatttcctccaaggttaagat |
191 |
Q |
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| T |
20761473 |
taagggattgctcctgaaagagaatttcctccaaggttaagat |
20761515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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