View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20348_low_4 (Length: 559)
Name: NF20348_low_4
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 544
Target Start/End: Original strand, 974391 - 974925
Alignment:
| Q |
10 |
attattctcaaagtaaagagtcaaaaatgttgtcatgacataattcaagtggtttgagttaagtcatccaaaaggctagatgtgtaattgaaagttaggg |
109 |
Q |
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| T |
974391 |
attagtctcaaagtaaagagtcaaaaatgttgtcatgacataattcaagtggtttgagttaagtcatccaaaaggctagatgtgtaattgaaagttaggg |
974490 |
T |
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| Q |
110 |
ttgtcattttgtgagcacaaagttaggcaaatgacgacatgatattgaaggagcattgatagtgtaccaaacttgaactttagtttgcaatacattttag |
209 |
Q |
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| T |
974491 |
ttgtcattttgtgagcacaaagttaggcaaatgacgacatgatattggaggagcattgatagtgtaccaaacttgaactttagtttgcaatacattttag |
974590 |
T |
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| Q |
210 |
gagaaagggatgagagggtcacttgagacttgccctatgttgtgttgtatcttataaaggaaatgaggacaattacttgtgcctttttaactgcatgcct |
309 |
Q |
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| T |
974591 |
gagaaagggatgagagggtcacttgagacttgccctatgttgtgttgtatcttataaaggaaatgaggacaattacttgtgcctttttaactgcatgcct |
974690 |
T |
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| Q |
310 |
atttcttcgtatcttcacaagaaaaagagtttctttcttacaccatttgccattccacactcaattcaatcacatgttttgtgtgcaaaaaactttttct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
974691 |
atttcttcgtatcttcacaagaaaaagagtttctttcttacaccatttgccattccacactcaattcaatcacatgttttgtgtgcaaaaaactttttct |
974790 |
T |
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| Q |
410 |
annnnnnnccaaatttaaagggaaaatagcatgtgatggataaggatcaatcatgttaggggtcggccactcaaactaaacgtcacgcatctagctattt |
509 |
Q |
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| T |
974791 |
atttttttccaaatttaaagggaaaatagcatgtgatggataaggatcaatcatgttaggggtcggccactcaaactaaacgtcacgcatctagctattt |
974890 |
T |
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| Q |
510 |
ttaaagatgagacaaaattaatgatagttaatact |
544 |
Q |
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| T |
974891 |
ttaaagatgagacaaaattaatgatagttaatact |
974925 |
T |
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