View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20348_low_5 (Length: 535)
Name: NF20348_low_5
Description: NF20348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20348_low_5 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 35927678 - 35928202
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927678 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataataataaagttagatttatgagattgtgagttacatttcatacttggtctt |
35927777 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927778 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
35927877 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927878 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
35927977 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927978 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
35928077 |
T |
|
| Q |
411 |
tatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35928078 |
tatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaa |
35928177 |
T |
|
| Q |
511 |
gcatatgggttacggtatagtgttt |
535 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
35928178 |
gcatattggttacggtatagtgttt |
35928202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 35910278 - 35910810
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35910278 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
35910377 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35910378 |
ttgaagttggaaaatcatacagaaatgcctttgaggttaacaatggtgttgttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35910477 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| || | || ||||| |
|
|
| T |
35910478 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctccagccagttgacgaggaagacataggtgtctttggc |
35910577 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
410 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || |||||| |
|
|
| T |
35910578 |
agttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgca |
35910677 |
T |
|
| Q |
411 |
tatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctat---------cgatgattgtttcac |
499 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||||||| || ||||||||||||||||||||| | ||| ||| |||||||||||||| |
|
|
| T |
35910678 |
tatttcataatgatataagttggtaagatattcatgtctcag---aaatgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcac |
35910774 |
T |
|
| Q |
500 |
cttcagtccaagcatatgggttacggtatagtgttt |
535 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35910775 |
cttcattccaagcatatgggttacggtatagtgttt |
35910810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 35940058 - 35940587
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | | ||| |||||| ||||||||||| ||||||||||||| ||| ||| ||| || ||||| |
|
|
| T |
35940058 |
catcatcaatccaagcattccctaactgaaattttgt-atgtacagataa---tgaagttagatatatgagattgtgatttatattgcattattagtctt |
35940153 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
35940154 |
ttgaagtttgatcaacatacagaaatgcctttgaggttaataatggtgttcttatagagtttattgttgtgtagaatagtggatgcaagttgaggaacat |
35940253 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
35940254 |
aatgaccagcataactctctccacttatgtaaaaatctcttgttttgtactgtggaaatctctccagccagttgataaggaagacataggaatccttggc |
35940353 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
410 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| | |||||||||||| || ||||| ||||| || || |||||| |
|
|
| T |
35940354 |
agttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgca |
35940453 |
T |
|
| Q |
411 |
tatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcatcat-aagaaacaatttcattctat---------cgatgattgtttca |
498 |
Q |
| |
|
|||||||||||| |||| | ||||| ||||||||||| || ||||||||||| |||||||||| | ||| ||| ||||||||||||| |
|
|
| T |
35940454 |
tatttcataatgatataagtttgtaagatattcatgtctcag---aaatgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttca |
35940550 |
T |
|
| Q |
499 |
ccttcagtccaagcatatgggttacggtatagtgttt |
535 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35940551 |
ccttcattccaagcatatgggttacggtatagtgttt |
35940587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 35921085 - 35921608
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||| |||||| ||||||| || ||| | |
|
|
| T |
35921085 |
catcatcaatccaagcattccctatctgaaatttttttaagtatagataataatgagattagaattatgagattgcgagttatatttcattattagtcat |
35921184 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
35921185 |
tcgaagtttgaacaacatacagaaatgcctttgaggttaataatggtgttgttatagagtttattgttgtaaagaatagtggatgcaagttgaggaacat |
35921284 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || | ||| || || |
|
|
| T |
35921285 |
aatgaccggcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaagacataggcatctttagc |
35921384 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
410 |
Q |
| |
|
||| || ||||||||||| ||||||||||| || | ||||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
35921385 |
agtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgca |
35921484 |
T |
|
| Q |
411 |
tatttcataatga--taaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtcc |
508 |
Q |
| |
|
|||||||||| || ||| | |||| || |||||||| || ||||||||||||| |||| || || |||||||||| | ||||||||| ||| |
|
|
| T |
35921485 |
tatttcataaggagttaagtttctaagataatcatgtctcag---aaatgcatcataaataacacattagttatatcgatgatcatctcaccttcattcc |
35921581 |
T |
|
| Q |
509 |
aagcatatgggttacggtatagtgttt |
535 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
35921582 |
aagcatatgggttacggtataatgttt |
35921608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 535
Target Start/End: Original strand, 35914713 - 35915237
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||| ||||| ||| ||| || ||||| |
|
|
| T |
35914713 |
catcatcaatccaagcattccctatctgaaattttttattgtaaagataatgataaagttagatttatgaggttgacagttatattgcattattagtctt |
35914812 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35914813 |
tcaaagtttgaacaacatacagaaatgcctttgaggttaatagtggtgttgttatagagtttattgttgtgaagaatagtcgatgcaagctgcggaacat |
35914912 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || | ||| || || |
|
|
| T |
35914913 |
agtgaccagcataactctctccagttatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgatgaggaaaacataggcatctttagc |
35915012 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgca |
410 |
Q |
| |
|
|| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||| |
|
|
| T |
35915013 |
ggtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgca |
35915112 |
T |
|
| Q |
411 |
tatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcatcat-aagaaacaatttcattctatcgatgattgtttcaccttcagtc |
507 |
Q |
| |
|
|||||||||| | |||| ||||||| || |||||||| || ||||||||| |||||| || || || ||| ||||||||| ||||||||| || |
|
|
| T |
35915113 |
tatttcataaggatataagttggtaagataatcatgtctcag---gcatgcatcataaagaaataaattagttatattgatgattgtctcaccttcattc |
35915209 |
T |
|
| Q |
508 |
caagcatatgggttacggtatagtgttt |
535 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |
|
|
| T |
35915210 |
caagcatatgggttgcggtataatgttt |
35915237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 35934492 - 35934929
Alignment:
| Q |
11 |
catcatcaatccaagcattccctatctgaaattttttaaagtaaagataatactgaagttagatttatgagattgtgagttacatttcatacttggtctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||| | ||||| ||||||||| | |||| ||| |||||||| ||| ||| || ||||| |
|
|
| T |
35934492 |
catcatcaatccaagcattccctatctgaaaaatttgaa-gtacaaataatcatgaagttagttatatgtgatagtgagttatattgcattattagtctt |
35934590 |
T |
|
| Q |
111 |
ttgaagtttgaagaacatacagaaatgcctttgaggttaataacagtgttgttatagagtttattgttgtgaagaatagtcgatgcaagttgaggaacat |
210 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||||||| | || |||||||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
35934591 |
ttgaagattgatcaacatacagatatgcctttgaggttaatgatggttttgttatagagtttatggtggtgaagaatagtggatgcaagttgaggaacat |
35934690 |
T |
|
| Q |
211 |
aatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagttgattaggaagacgtaagaatccttggc |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || || | ||| || || |
|
|
| T |
35934691 |
aatgaccagcataactctctccagttatgtaaaaatctctggttttgtactgtggaaatctctccagccagttgattaggaaaacataggcatctttagc |
35934790 |
T |
|
| Q |
311 |
agttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc- |
409 |
Q |
| |
|
||| || |||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
35934791 |
agtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgca |
35934890 |
T |
|
| Q |
410 |
-atatttcataatgataaactggtaagttattcatgtct |
447 |
Q |
| |
|
|||||| ||||||||||| |||| || | ||||||||| |
|
|
| T |
35934891 |
tatattttataatgataaattggttagatgttcatgtct |
35934929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 11084471 - 11084527
Alignment:
| Q |
194 |
tgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
|
|
| T |
11084471 |
tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct |
11084527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 6208979 - 6209039
Alignment:
| Q |
349 |
tgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaagataacatttgccactgc |
6209039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 6208831 - 6208910
Alignment:
| Q |
201 |
tgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagcca |
280 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||| | ||| ||| || || ||||||||||||||||| ||||| |
|
|
| T |
6208831 |
tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagcca |
6208910 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 6215695 - 6215780
Alignment:
| Q |
198 |
agttgaggaacataatgaccagcataactctctccagctatgtaaaaagctcttgttttgtactgtggaaatctctccagccagtt |
283 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || |||| |||| | ||| ||| | || ||||||||||||||||| |||||||| |
|
|
| T |
6215695 |
agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctcaagccagtt |
6215780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 6178241 - 6178277
Alignment:
| Q |
351 |
tttgaataggaaaatcccactcctgctggagactcta |
387 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactcta |
6178277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 316145 - 316183
Alignment:
| Q |
196 |
caagttgaggaacataatgaccagcataactctctccag |
234 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
316145 |
caagttgaggaacataatgtccagcataactttctccag |
316183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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