View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_high_10 (Length: 259)
Name: NF20349_high_10
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 5549283 - 5549516
Alignment:
| Q |
12 |
aagaacatcatttgtagaaattaataaaagggtttcttaatatttaataattttgtagttattccaaaattagatatattattttagtactttattttat |
111 |
Q |
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| T |
5549283 |
aagaacatcatgtgtagaaattaataaaagggtttcttaatattttataattttgtagatattccaaaattagatatattattttagtactttattttat |
5549382 |
T |
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| Q |
112 |
atcacatccaatcagattttgacatgatgactgaagaatgagatcattggannnnnnnnnnnnnnaaacagttgtttttaaggttcagaaaattaccaag |
211 |
Q |
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| T |
5549383 |
atcacatccaatcagattttgacatgatgactgaagaatgagatcattggattttttttctttttaaacagttgtttttaaggttcagaaaattaccaag |
5549482 |
T |
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| Q |
212 |
aaatatggatgatttgaccatcaacagagacaag |
245 |
Q |
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| T |
5549483 |
aaatatggatgatttgaccatcaacagagacaag |
5549516 |
T |
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