View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20349_high_5 (Length: 386)
Name: NF20349_high_5
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 36995807 - 36995453
Alignment:
| Q |
1 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36995807 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaatggttttcttga |
36995708 |
T |
|
| Q |
101 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995707 |
cgctgagggtaatgttgaagtagaattgtagattcaggtgttggggtaagtcgttatgtatgcattagaaatctcaatctcattctactgttgttggtca |
36995608 |
T |
|
| Q |
201 |
atatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
296 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995607 |
atatactcataaattttttaccttgttactaagtatattgaccaataacaggcattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
36995508 |
T |
|
| Q |
297 |
atgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
351 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
36995507 |
atgcacagagaaaatgtcttcccacctctccttgtaaggaagtattgagctgagc |
36995453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 37005745 - 37005404
Alignment:
| Q |
1 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||| ||| | | || ||| |||||||||| |||| | ||||||||||| || ||||||||| |
|
|
| T |
37005745 |
atttcatttgagtttattcagatgcatttagcttcgtttctaaagattacatgggcgatgtatttgggcttgcggctgcctgtgaaatagattttcttga |
37005646 |
T |
|
| Q |
101 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtca |
200 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||| ||||||||| ||| |||||||| | || ||||||| |
|
|
| T |
37005645 |
ccctgagggtaatgttaaagtagaattgcagattcaggtgattgggtaagtcattatgtgtgcattaga------aatatcattctatttttattggtca |
37005552 |
T |
|
| Q |
201 |
atatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
296 |
Q |
| |
|
| ||||||||| | |||||||| | |||||||||||||| | |||||| ||| |||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
37005551 |
acatactcatagaattttaaccatattactaagtatatttatcaataataggcatcaggtgtcactgcattacatgcaactcattgtgtgattgttttta |
37005452 |
T |
|
| Q |
297 |
atgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcga |
344 |
Q |
| |
|
|||||||| ||||| || || || ||| |||||| |||||||| |||| |
|
|
| T |
37005451 |
atgcacagtgaaaaagttttcccgcctttccttgaaaggaagtttcga |
37005404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 13684419 - 13684773
Alignment:
| Q |
1 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||| ||| |||| | |||||||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
13684419 |
atttcatttgagtttattcagatcgattccactcagtttgtaagactcgcccgcgatatgtatttcatcttgagcgtgcctatgaaaaaggttttcttca |
13684518 |
T |
|
| Q |
101 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13684519 |
cgctgagggtaatgttcaagtagaattgcagattcagatgtttgggtaagtcgttatgtatgcattagaaatctcaatctcattctactattgttggtca |
13684618 |
T |
|
| Q |
201 |
atatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
296 |
Q |
| |
|
||||||||||| | |||| ||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13684619 |
atatactcatagaatttttaccgtattactgagtatattgaccaataacaagcattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
13684718 |
T |
|
| Q |
297 |
atgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
351 |
Q |
| |
|
|||| |||||||||| |||| || |||||||||| || |||||||||| |||||| |
|
|
| T |
13684719 |
atgcgcagagaaaatttcttcccgcctctccttgtaaagaagtatcgaactgagc |
13684773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 22191945 - 22191591
Alignment:
| Q |
1 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |||||||||| ||||| ||| ||| ||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
22191945 |
atttcatctgagtttattcagatcgattccactcagtttgtaagattcacctagggtatgattttcatcttgagcatgcttgtgaaaaaggttttcttga |
22191846 |
T |
|
| Q |
101 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtca |
200 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
22191845 |
cgctgaggataatgttaaagtagaattgcagattcaaatgtttgggtaagtcgttatgtatgcataagaaatctcaatctcattttactgttgttggtca |
22191746 |
T |
|
| Q |
201 |
atatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttttta |
296 |
Q |
| |
|
||||||||||| | |||| || | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22191745 |
atatactcatagaatttttacaatattactaagtatattgaccaataacatgcattcggtgtcactgaattccatgcaactcattgtatgattgttgtta |
22191646 |
T |
|
| Q |
297 |
atgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctgagc |
351 |
Q |
| |
|
||||||||||||||| |||| || |||||| ||| || || ||||| | |||||| |
|
|
| T |
22191645 |
atgcacagagaaaatatcttcccgcctctctttgtaaagaggtatcaaactgagc |
22191591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 26648486 - 26648384
Alignment:
| Q |
249 |
cattgggtgtcactgaattccatgcaactcattgtatgattgtttttaatgcacagagaaaatgtcttaccacctctccttgcaaggaagtatcgagctg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| | |||||||||| || |||||||||||||| |
|
|
| T |
26648486 |
cattgggtgtcactgaattccatgcaactcattgtatgatcgttattaatgcacagagaaaatttcttccagcctctccttgtaaagaagtatcgagctg |
26648387 |
T |
|
| Q |
349 |
agc |
351 |
Q |
| |
|
||| |
|
|
| T |
26648386 |
agc |
26648384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 26648617 - 26648531
Alignment:
| Q |
81 |
tgtgaaaaaggttttcttgacgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcatta |
167 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| | || ||||||||| ||||||||||||| |
|
|
| T |
26648617 |
tgtgaagaaggttttcttgacgatgagggtaatgttaaagtagaattgcagattcagatttttgggtaagtccttatgtatgcatta |
26648531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 8598315 - 8597983
Alignment:
| Q |
1 |
atttcatttgagtttattcagatcgatttcacttagtttgtaaggctcacccgggggatgtatttgatcttgagcgtgcctgtgaaaaaggttttcttga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8598315 |
atttcatttgagtttaatcagatcgattccactcagtttgtaagactcacccggggtatgtatatgattttgagcgtgcctgtgaaaatggttttcttga |
8598216 |
T |
|
| Q |
101 |
cgctgagggtaatgttgaagtagaattgcagattcaggtgttggggtaagtcggtatgtatgcattagaaatctcaatctcattctactgttgttggtc- |
199 |
Q |
| |
|
||| |||| ||| ||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8598215 |
tgctaagggcaatcttgaagtagaattgcagtttcagatgtttgggtaagtcgttatttatgcattagaaatctcaatctcattctactgttgttggtca |
8598116 |
T |
|
| Q |
200 |
--aatatactcataaatttttaaccttgttactaagtatattgaccaataa----cattgggtgtcactgaattccatgcaactcattgtatgattgttt |
293 |
Q |
| |
|
|||||||||||| | |||| ||| | ||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
8598115 |
ataatatactcatataatttttaccatattactaagtatattgaccaataacagtcaatgggtgccattgaattccatgcaactcattgtatgattgttc |
8598016 |
T |
|
| Q |
294 |
ttaatgcacagagaaaatgtcttaccacctctc |
326 |
Q |
| |
|
| |||||||||| ||||||||| || |||||| |
|
|
| T |
8598015 |
taaatgcacagactaaatgtcttcccgcctctc |
8597983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University