View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_low_11 (Length: 328)
Name: NF20349_low_11
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 28312648 - 28312339
Alignment:
| Q |
5 |
tgggtagataatactccataggttattttgaaagagaatatattttgcaggagacagaacttgtactattaatcttggtggccaaacattaatgtgacgt |
104 |
Q |
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| T |
28312648 |
tgggtatataaaactccataggttattttgaaagagaatatattt-gcaggagacagaacttgtactattaatcttggtggccaaacattaatgtggcgt |
28312550 |
T |
|
| Q |
105 |
atatgaaactatattgtttatatgagc-atatatattggcatctttctcagtcttggggacaattgagcgtttcatatatgccccgctatcacagtaat- |
202 |
Q |
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| T |
28312549 |
atatgaaactatattgtttatatgagccatatatattggcatctttctcagtcttggggacaattgagcgtttcatatatgccccgctatcacagtaata |
28312450 |
T |
|
| Q |
203 |
-gtggcccagttatactccactccgacttgtcatttgtcaatgtttctaaatttggagaattatatgtgaacattcataatctcattgagatctcgagcg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||| |
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| T |
28312449 |
tgtggcccagttatactccactccgacttgtcatttgtcaatgtttctaaatttggagaattatatgtggacattcataaactcattgagatctcaagcg |
28312350 |
T |
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| Q |
302 |
atgacgatgtg |
312 |
Q |
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||| ||||||| |
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| T |
28312349 |
atggcgatgtg |
28312339 |
T |
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