View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_low_2 (Length: 476)
Name: NF20349_low_2
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 464
Target Start/End: Original strand, 42005764 - 42006208
Alignment:
| Q |
20 |
cttacctgacggtcaagtcatcatgttatataccggttcaaccaatgaaacagtgcaagtccaaaatcttgcataccctgctgatctcaatgaccctctc |
119 |
Q |
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| T |
42005764 |
cttacctgacggtcaagtcatcatgttatatactggttcaaccaatgaaacagtgcaagtccaaaatcttgcataccctgctgatctcaatgaccctctc |
42005863 |
T |
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| Q |
120 |
cttgtggattggatcaaataccctgccaacccggttctcgtccctccaccaggcattcttccaaaggactttcgcgacccaacaactgcttggctaactt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42005864 |
cttgtggattggatcaaataccctgccaacccggttctcgtccctccaccaggcattcttccaaaggactttcgcgacccaacaactgcttggctcactt |
42005963 |
T |
|
| Q |
220 |
ctgaaggaaaatggagaatcaccataggctccaagattaacaaaactggcgttgctttggtttacgacacagtggacttcaagacctatgagcgtaaaga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42005964 |
ctgaaggaaaatggagaatcaccataggctccaagattaacaaaactggcgttgctttggtttacgacacagtggacttcaagacctatgagcgtaaaga |
42006063 |
T |
|
| Q |
320 |
ggatttgcttgacgctgttcctggcaccggtatgtgggagtgtgtggactttttccctgtttccatgaagtctgaaaatggcttggatacttctgttaat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006064 |
ggatttgcttgacgctgttcctggcaccggtatgtgggagtgtgtggactttttccctgtttccatgaagtctgaaaatggcttggatacttctgttaat |
42006163 |
T |
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| Q |
420 |
ggggaggaggttaagcatgtgatgaaggtgagcttggatgatgat |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006164 |
ggggaggaggttaagcatgtgatgaaggtgagcttggatgatgat |
42006208 |
T |
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