View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_low_3 (Length: 475)
Name: NF20349_low_3
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 43395634 - 43396091
Alignment:
| Q |
18 |
atgaaacatgtgtccaacattggtgcatatcactgttattttgaattgcattactgaataattcatgcattgttaacatacaagcagtctatttccagaa |
117 |
Q |
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| T |
43395634 |
atgaaacatgtgtccaacattggtgcatatcactgttattttgaattgcattactgaataattcatgcattgttaacatacaagcagtctatttccagaa |
43395733 |
T |
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| Q |
118 |
gccaaacatgtgtttgcagagctataaacacttggttactgtaatttaaccaaggttaatgatgcagtatagctaaggaagttatggaaggaacacctca |
217 |
Q |
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| T |
43395734 |
gccaaacatgtgtttgcagagctataaacacttggttactgtaatttaaccaaggttaatgatgcagtatagctaaggaagttgtggaaggaacacctca |
43395833 |
T |
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| Q |
218 |
aaaccttctggagtcggtggcccaaaaaattgcaatctctactttgacaatttgcaaagagatatctgcagttcgtgtgaaggttggaaagcctcatgtg |
317 |
Q |
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| T |
43395834 |
aaaccttctggagtcgatggcccaaaaaattgcaatctctactttgacaatttgcaaagagatatctgcagttcgtgtgaaggttggaaagcctcatgtg |
43395933 |
T |
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| Q |
318 |
ccgattctaggtccggttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagtttttta |
417 |
Q |
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| T |
43395934 |
ccgattctaggtccggttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagtttttta |
43396033 |
T |
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| Q |
418 |
cgtcttccaattctgtctgttttatgtaataacataactcttctctccctgagcacac |
475 |
Q |
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| T |
43396034 |
cgtcttccaattctgtctgttttatgtaataacattactcttccctccctgagcacac |
43396091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 177 - 433
Target Start/End: Original strand, 43399934 - 43400190
Alignment:
| Q |
177 |
tgatgcagtatagctaaggaagttatggaaggaacacctcaaaaccttctggagtcggtggcccaaaaaattgcaatctctactttgacaatttgcaaag |
276 |
Q |
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| T |
43399934 |
tgatgcagcatagctaaggaagttattgaaggaccagctctaaaccttctggaatcagtggcccaaaaaattgcaatctctactttgactattcacaaag |
43400033 |
T |
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| Q |
277 |
agatatctgcagttcgtgtgaaggttggaaagcctcatgtgccgattctaggtccggttgattacttaggcgttgagattctgagacgcagaagtgattt |
376 |
Q |
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| T |
43400034 |
agatatctgctgttcgtgtgaagattggaaagcctcatgtggctattcagggtccggttgattacttgggcgttgagattctgagacgcagaagcgattt |
43400133 |
T |
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| Q |
377 |
gacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgt |
433 |
Q |
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| T |
43400134 |
ggcagactagaactttcatatttagtactgcaggttttttatgtattccagttctgt |
43400190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 427
Target Start/End: Original strand, 43392511 - 43392603
Alignment:
| Q |
333 |
gttgattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgta-tttactaatgcaagttttttacgtcttccaa |
427 |
Q |
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| T |
43392511 |
gttgattacttaggcgttgaaa---tgaggcgcataagcgatttgaaagactagaactttcatattttactattgcaaggttttaatgtcttccaa |
43392603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 185 - 403
Target Start/End: Complemental strand, 37410587 - 37410369
Alignment:
| Q |
185 |
tatagctaaggaagttatggaaggaacacctcaaaaccttctggagtcggtggcccaaaaaattgcaatctctactttgacaatttgcaaagagatatct |
284 |
Q |
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| T |
37410587 |
tatagctaagaaagttattgaaggaccagctcacaaccttctggagtcagtggcccataaaattgcaatcgctactttggaagttcacaaagaaatatct |
37410488 |
T |
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| Q |
285 |
gcagttcgtgtgaaggttggaaagcctcatgtgccgattctaggtccggttgattacttaggcgttgagattctgagacgcagaagtgatttgacagact |
384 |
Q |
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| T |
37410487 |
actgttcgtgtgaaggttggaaagcctcatgtggcgattcagggtccggttgattacttaggtgttgagattctgagacgcagaagcgatttgacaaagt |
37410388 |
T |
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| Q |
385 |
aaaactttcgtatttacta |
403 |
Q |
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| T |
37410387 |
agaactttcatatttacta |
37410369 |
T |
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