View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20349_low_4 (Length: 458)
Name: NF20349_low_4
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 6196889 - 6197136
Alignment:
| Q |
18 |
agatgtggataatttttcccttgttaacattcaatttttgaatttgaaaggtaaaaatctacttaaattttaaataaattaaactgataaattgaatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6196889 |
agatgtggataatttttcccttgttaacattcaatttttgaatttgaaaggtaaaaatctacttaaattttaaataaattaaactgataaattgaatttc |
6196988 |
T |
|
| Q |
118 |
atgttgttagtatttcatgattgtattttgaatttgaacccacctcgagaacgagaaagatggagacaagtattttgaagccaatgtcagcataataaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6196989 |
atgttgttagtatttcatgattgtattttgaatttgaacccacct------cgagaaagatggagacgagtattttgaagccaatgtcagcataataaat |
6197082 |
T |
|
| Q |
218 |
gtaggcaacaagatggagacaagtgacgttaccaagtacgaggcaataatatta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6197083 |
gtaggcaacaagatggagacaagtgacgttaccaagtacgaggcaataatatta |
6197136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 273 - 448
Target Start/End: Original strand, 6197635 - 6197810
Alignment:
| Q |
273 |
taataataagggaaaaattgccagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct |
372 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6197635 |
taataataaggggaaaattgctagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct |
6197734 |
T |
|
| Q |
373 |
gttcatttttattcaaaatatgaattcccatcatattcattagttactgggttaaccaatttgagttttgtctgtg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6197735 |
gttcatttttattcaaaatatgaattcccatcattttcattagttactgggttaaccaatttgagttttgtctgtg |
6197810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University