View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_low_7 (Length: 390)
Name: NF20349_low_7
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 6196941 - 6197136
Alignment:
| Q |
2 |
aaaaatctacttaaattttaaataaattaaactgataaattgaatttcatgttgttagtatttcatgattgtattttgaatttgaacccacctcgagaac |
101 |
Q |
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| T |
6196941 |
aaaaatctacttaaattttaaataaattaaactgataaattgaatttcatgttgttagtatttcatgattgtattttgaatttgaacccacct------c |
6197034 |
T |
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| Q |
102 |
gagaaagatggagacaagtattttgaagccaatgtcagcataataaatgtaggcaacaagatggagacaagtgacgttaccaagtacgaggcaataatat |
201 |
Q |
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| T |
6197035 |
gagaaagatggagacgagtattttgaagccaatgtcagcataataaatgtaggcaacaagatggagacaagtgacgttaccaagtacgaggcaataatat |
6197134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 205 - 380
Target Start/End: Original strand, 6197635 - 6197810
Alignment:
| Q |
205 |
taataataagggaaaaattgccagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct |
304 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6197635 |
taataataaggggaaaattgctagagctgagaaccactcttcaatcctaatccattctcaatgatttctgtattctatttttctcaacttccacttttct |
6197734 |
T |
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| Q |
305 |
gttcatttttattcaaaatatgaattcccatcatattcattagttactgggttaaccaatttgagttttgtctgtg |
380 |
Q |
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| T |
6197735 |
gttcatttttattcaaaatatgaattcccatcattttcattagttactgggttaaccaatttgagttttgtctgtg |
6197810 |
T |
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