View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20349_low_9 (Length: 345)
Name: NF20349_low_9
Description: NF20349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20349_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 5549520 - 5549845
Alignment:
| Q |
1 |
ttttggttaataatcttcaatgtgttatgactatataaatactatgattgacatctttgacatgaaattgaaaatggtagaatcatgcttatgtaagaat |
100 |
Q |
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| T |
5549520 |
ttttggttaataatcttcaatgtgttatgactatataaatactatgattgacacctttgacatgaaattgaaaatggtagaatcatgcttatgtaagaac |
5549619 |
T |
|
| Q |
101 |
tgacaaccagaattcatagaaaggtaaagtataaacccaataaatcagattagtaaagtagtaaaaggtannnnnnnnaatcatttctttgctaatttcg |
200 |
Q |
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| T |
5549620 |
tgacaaccagaattcatagaaaggtaaagtataaacccaataaatcagattagtaaagtagtaaaaggtattttttttaatcatttctttgctaatttcg |
5549719 |
T |
|
| Q |
201 |
tcctagtaattttgatttaatttactcaacctaacacttacacgcatgtttttatgtgtgtgaaaattgaaaacatatacatcaatgatttgatatactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5549720 |
tcctagtaattttgatttaatttactcaacctaacacttacacgcatgtttttatgtgtgtgaaaattgaaaacatatacatcaatgatttgatatactc |
5549819 |
T |
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| Q |
301 |
aacagctccagttatgatgaatttac |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5549820 |
aacagctccagttatgatgaatttac |
5549845 |
T |
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