View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034R-Insertion-10 (Length: 138)
Name: NF2034R-Insertion-10
Description: NF2034R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034R-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 3e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 43566163 - 43566292
Alignment:
| Q |
9 |
gctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgtttctcttgttcttc |
108 |
Q |
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| T |
43566163 |
gctttcgaccagaattccatgcaaatccactattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgtttctcttgttcttc |
43566262 |
T |
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| Q |
109 |
aagagagaaatcatgtaacttcattctgta |
138 |
Q |
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| T |
43566263 |
aagggagaaatcatttaacttcattctgta |
43566292 |
T |
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Target: chr1; HSP #2
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 43474084 - 43473958
Alignment:
| Q |
9 |
gctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgtttctcttgttcttc |
108 |
Q |
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||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
43474084 |
gcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtctaaggcgatgaagttgaaaacggtttgtttctcttcttcttc |
43473985 |
T |
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| Q |
109 |
aagagagaaatcatgtaacttcattct |
135 |
Q |
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| T |
43473984 |
aagagagaaatcatgtaacttcattct |
43473958 |
T |
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