View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2034R-Insertion-2 (Length: 870)

Name: NF2034R-Insertion-2
Description: NF2034R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2034R-Insertion-2
NF2034R-Insertion-2
[»] chr3 (1 HSPs)
chr3 (399-870)||(6786434-6786885)
[»] chr7 (4 HSPs)
chr7 (215-390)||(38984496-38984671)
chr7 (36-390)||(10582923-10583292)
chr7 (268-390)||(356897-357020)
chr7 (98-160)||(5458577-5458639)
[»] chr1 (5 HSPs)
chr1 (31-160)||(16465686-16465822)
chr1 (269-390)||(16465528-16465650)
chr1 (300-390)||(50249155-50249246)
chr1 (77-127)||(50248297-50248347)
chr1 (215-272)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (188-288)||(6762518-6762618)
[»] chr5 (2 HSPs)
chr5 (31-136)||(1265276-1265388)
chr5 (322-394)||(1265396-1265469)
[»] chr6 (2 HSPs)
chr6 (31-76)||(9646155-9646200)
chr6 (31-76)||(9652172-9652217)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 399 - 870
Target Start/End: Complemental strand, 6786885 - 6786434
Alignment:
Q  399 cctacttgaaaatgaagagtgtcatgaaatg-ttttgaataattt-cattaattcggtacagaaattagagactctagaagttccatgcttgcaaaactt 496  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  6786885 cctacttgaaaatgaagaatgtcatgaaatggttttgaataattttcattgattcagtacagaaattagagactctagaagttccatgtttgcaaaactt 6786786  T
Q  497 atgatgatctatatttggcatataacacaaatataacatagccagttgaaagtatcaacaagaaaaccagataatttatgttaaaatatgacaaataatc 596  Q
    ||||||||||              |||| ||||||||||||||||||||||| || || ||||||| ||||| |||||||||||||||||||||||||||    
T  6786785 atgatgatct--------------acaccaatataacatagccagttgaaagcatgaataagaaaaacagatgatttatgttaaaatatgacaaataatc 6786700  T
Q  597 atgtgacagaggaaaggtgattattaagg--aattgtttcatatgcctctcgcattggaccctcagatttaacagatcttaactccgtattgcacaaaat 694  Q
    ||||||| ||||||||||||||| |||||  |||||   || |       |  | | ||||||  || |||||  |||||||||||| ||||| |||||     
T  6786699 atgtgacggaggaaaggtgattaataagggtaattg---caaa------gctaaatagacccttggaattaacgtatcttaactccggattgcgcaaaac 6786609  T
Q  695 ttatcgagagttatgacccgatctctgnnnnnnnggatcaggacgtaaatcccaattggattattttagaggttgagcaatttagggggcctatagagca 794  Q
     |||||||||||||| ||||||| |||       |||||||  ||||| |||| || || |||||||||||| |||||||| |  |||| ||||||||||    
T  6786608 ctatcgagagttatggcccgatcgctg-ttttttggatcagagcgtaactcccgatcggcttattttagaggctgagcaatctgaggggactatagagca 6786510  T
Q  795 aaatcaccattaataagtagaaagtaacattaattttaaa--caaattttacaaatattatgtgatggaggagtagtt 870  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||  ||||||||||||||||    
T  6786509 aaatcaccattaataagtagaaagtaacattaattttaaaacaaaattttacaaatatta--tgatggaggagtagtt 6786434  T

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Target: chr7 (Bit Score: 121; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 215 - 390
Target Start/End: Complemental strand, 38984671 - 38984496
Alignment:
Q  215 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc 314  Q
    |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  38984671 gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc 38984572  T
Q  315 ctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatgccctctgaatccgc 390  Q
    || ||||||||||| |||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||||    
T  38984571 ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctctgaatccgc 38984496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 36 - 390
Target Start/End: Complemental strand, 10583292 - 10582923
Alignment:
Q  36 aacccttatacagccagagtgcagaaattaaacaaaagaaaaag-------tagtagccatagcaggccaactatccaaacataacctaagctagcaaaa 128  Q
    ||||||| |||||||||||||||||||| | |||| ||||| ||       ||| ||||| | |||||||  |||| ||||| || |||||||| |||||    
T  10583292 aacccttgtacagccagagtgcagaaatgacacaagagaaagagagacaaatagcagccacaacaggccagttatcaaaacagaaactaagctaccaaaa 10583193  T
Q  129 acaaagagcaatcccaaaggcaatgagaaaac---------tgaacatactcttaaaatacttggcgatgtctttgggaaactccttttaaaaatgagtt 219  Q
    |||||||||  ||||||| |||| ||||||||         ||||||  |||  ||| ||||||| ||||||| |||||| |||||||| | ||||||||    
T  10583192 acaaagagcggtcccaaatgcaaagagaaaaccaagaacaatgaacaagctcacaaattacttggtgatgtctatgggaacctcctttttagaatgagtt 10583093  T
Q  220 tgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattccctgga 319  Q
    ||||  ||||||||||||||||  |||| ||| |||| |||||| || ||||  |||||||||||||||||||||||||| || ||||||||||||| ||    
T  10583092 tgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgctgaaacccttttacacaggagcgaaggaagacattccctaga 10582995  T
Q  320 caactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatgccctctgaatccgc 390  Q
    |||||||||||| ||||||||||| || |||||| || ||||||||  ||||||||||||||||||||||||    
T  10582994 caactaaggttccaaaacttttggtttggaaatacccattttggaacgggtgatgatgccctctgaatccgc 10582923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 357020 - 356897
Alignment:
Q  268 tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-t 366  Q
    ||||| || ||||||||||||||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || |||||| ||| |||||||      
T  357020 ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaacg 356921  T
Q  367 ggtgatgatgccctctgaatccgc 390  Q
    |||| |||||||||||||||||||    
T  356920 ggtgttgatgccctctgaatccgc 356897  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 5458577 - 5458639
Alignment:
Q  98 aactatccaaacataacctaagctagcaaaaacaaagagcaatcccaaaggcaatgagaaaac 160  Q
    ||||||| ||| | ||||||| |||||||||||||||| |||||||| |||||||||||||||    
T  5458577 aactatcaaaatagaacctaaactagcaaaaacaaagaacaatcccataggcaatgagaaaac 5458639  T

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Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 16465822 - 16465686
Alignment:
Q  31 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa-------aagtagtagccatagcaggccaactatccaaacataacctaagctag 123  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||       |||||| ||||| ||| ||||| ||||| ||||| ||||||||||||    
T  16465822 gcttgaacccttatacagccagagtgcagaaaaaacacaaaagaaagagagacaagtagcagccacagctggccagctatcaaaacagaacctaagctag 16465723  T
Q  124 caaaaacaaagagcaatcccaaaggcaatgagaaaac 160  Q
    |||||||||||||||||||||||||||||||||||||    
T  16465722 caaaaacaaagagcaatcccaaaggcaatgagaaaac 16465686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 16465650 - 16465528
Alignment:
Q  269 ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaatg- 367  Q
    |||||||||||||||||||||| ||| || ||||||| ||||||  || | |||||||||||||||||||||||| ||||||||| ||||||||||| |     
T  16465650 ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaacga 16465551  T
Q  368 gtgatgatgccctctgaatccgc 390  Q
    |||||||||||||||||||||||    
T  16465550 gtgatgatgccctctgaatccgc 16465528  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 50249155 - 50249246
Alignment:
Q  300 aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa-tggtgatgatgccctctgaatccgc 390  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||  |||||||||||||| |||||||||    
T  50249155 aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaacgggtgatgatgccctttgaatccgc 50249246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 50248297 - 50248347
Alignment:
Q  77 aagtagtagccatagcaggccaactatccaaacataacctaagctagcaaa 127  Q
    |||||||||||| | ||||| ||||||| ||||| ||||||||||||||||    
T  50248297 aagtagtagccacaacaggcaaactatcaaaacagaacctaagctagcaaa 50248347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 272
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
Q  215 gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt 272  Q
    |||||| |||||||||||| ||||||| ||||| |||||||| |||||  ||||||||    
T  50248348 gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt 50248405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 188 - 288
Target Start/End: Original strand, 6762518 - 6762618
Alignment:
Q  188 tgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaaccctt 287  Q
    ||||||||| || |||||| | | || |||||  |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  6762518 tgtctttggtaacctccttctgagaacgagttcaaattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaaccctt 6762617  T
Q  288 t 288  Q
    |    
T  6762618 t 6762618  T

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Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 1265276 - 1265388
Alignment:
Q  31 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa-------aagtagtagccatagcaggccaactatccaaacataacctaagctag 123  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||       |||||||||||| | ||||||||||||| |||   ||||||||||||    
T  1265276 gcttgaacccttatacagccagagtgcaaaaactacacaaaagaaagagagacaagtagtagccacatcaggccaactatctaaattgaacctaagctag 1265375  T
Q  124 caaaaacaaagag 136  Q
    |||||||||||||    
T  1265376 caaaaacaaagag 1265388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 1265396 - 1265469
Alignment:
Q  322 actaaggttctaaaacttttggctttgaaataacctttttggaatgg-tgatgatgccctctgaatccgctgaa 394  Q
    |||| ||||||||||||||||| |||| |||  | ||||| ||| || ||||||||||||||||||||| ||||    
T  1265396 actacggttctaaaacttttggttttgtaatgccgtttttagaacgggtgatgatgccctctgaatccgttgaa 1265469  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9646155 - 9646200
Alignment:
Q  31 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 76  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9646155 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9646200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 9652172 - 9652217
Alignment:
Q  31 gcttgaacccttatacagccagagtgcagaaattaaacaaaagaaa 76  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||    
T  9652172 gcttgaacccttatacagccaaagtgcaaaaattacacaaaagaaa 9652217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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