View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034R-Insertion-3 (Length: 424)
Name: NF2034R-Insertion-3
Description: NF2034R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034R-Insertion-3 |
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| [»] scaffold0421 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0421 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 13636 - 13270
Alignment:
| Q |
8 |
atacatcaccttcaacggtttgattcggcgacggagacaacagtcaatgttgaattgcagaaggagaagagaccgtttgagagaatgcggccgtcggaga |
107 |
Q |
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| T |
13636 |
atacatcaccttcaacggtttgattcggcgacggagacagcagtcgatgttgaatcgcagaaggagaagagaccgttagagagaatgcagccgtcggaga |
13537 |
T |
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| Q |
108 |
ctgggaagagatggcggtcggagattggagactaggaggagatggcggtcaaagatcgaagtttgggaggggatggcgaagacgaagagatggagggagc |
207 |
Q |
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| T |
13536 |
ctgggaagagatggcggtcggagatcggagactatgaggagatggcggtcaaagaccggagattgggaggagatggcaaagacagagagatggagagagc |
13437 |
T |
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| Q |
208 |
agagaccgcgtttctca------------------aatatttttgtttgttggatctattcttttctttattatcattatttacaaagttaaatttttta |
289 |
Q |
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| T |
13436 |
agagaccgcgtttctcagataggagacaaaatatcaattttttcgtttgttggatctattcttttctttattatcattctttacatagttaaatttttta |
13337 |
T |
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| Q |
290 |
atatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
356 |
Q |
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| T |
13336 |
atatttccatgccatgtcatcggtggtagaaaagggtgtaccaaaagagtggtacatgaatcttttt |
13270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 47345444 - 47345551
Alignment:
| Q |
242 |
gatctattcttttctttattatcattatttacaaagttaaattttttaatatttccatgccatgtcattggtggtagaaaagggtgtaccaaaagagtgg |
341 |
Q |
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| T |
47345444 |
gatctattcttttcttttttatcattctttacaaagttaaattgtttaatatttccatgtcatgtcatcagtgctataaaagggtgtaccaaaagagtaa |
47345543 |
T |
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| Q |
342 |
tacatgaa |
349 |
Q |
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|||||||| |
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| T |
47345544 |
tacatgaa |
47345551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 47345319 - 47345372
Alignment:
| Q |
70 |
ggagaagagaccgtttgagagaatgcggccgtcggagactgggaagagatggcg |
123 |
Q |
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| T |
47345319 |
ggagaagagatcgttagagagaatgcggcggtcggagattgggaggagatggcg |
47345372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 3798110 - 3798071
Alignment:
| Q |
242 |
gatctattcttttctttattatcattatttacaaagttaa |
281 |
Q |
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| T |
3798110 |
gatctattcttttcttttttatcattctttacaaagttaa |
3798071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 3798236 - 3798187
Alignment:
| Q |
72 |
agaagagaccgtttgagagaatgcggccgtcggagactgggaagagatgg |
121 |
Q |
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| T |
3798236 |
agaagagatcgttagagagaatgcggcggtcggagactgagaggagatgg |
3798187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 42211920 - 42211985
Alignment:
| Q |
359 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaaccc |
424 |
Q |
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| T |
42211920 |
actttttgtgacgtgcactttctctgtccttttctacggttttcattttctctcaaatctaaaccc |
42211985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 39033975 - 39034016
Alignment:
| Q |
113 |
aagagatggcggtcggagattggagactaggaggagatggcg |
154 |
Q |
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| T |
39033975 |
aagagatggcggtcggagatcggagactgggaggagatggcg |
39034016 |
T |
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