View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_high_5 (Length: 249)
Name: NF2034_high_5
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 15509304 - 15509086
Alignment:
| Q |
2 |
aaccaacatggtatcgagaaggtcagtataaaacaactctctcatnnnnnnngaaaccgagtttgattcctaaagttgcccatttgggagctaacctaac |
101 |
Q |
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| T |
15509304 |
aaccaacatggtatcgagaaggtcagtataaaacaactctctcataaaaaaagaaaccgagtttgattcctaaacttgcccatttgggagctaacctaac |
15509205 |
T |
|
| Q |
102 |
tcgtgtggagcataataaaacaaaaagtcctgccgacaggtcaatgattagtctcatagcatatctaaagagcctaagtcgtggatatcatcaataacat |
201 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15509204 |
tcgtgtggaggataataaaa-aaaaagtcctgccgacaggtcaatgattagtctcatagcatatctaaagagcctaagtcgtggatatcatcaataacat |
15509106 |
T |
|
| Q |
202 |
cgtacaaagccttaactacg |
221 |
Q |
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|||||||||||||||||||| |
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| T |
15509105 |
cgtacaaagccttaactacg |
15509086 |
T |
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