View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_low_1 (Length: 675)
Name: NF2034_low_1
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 12 - 660
Target Start/End: Complemental strand, 2564923 - 2564286
Alignment:
| Q |
12 |
agcatttatataagtagtaggttcagaatgagagtaatcagatcttgcatcattaaattggtcattaaaatcagggcctccaacaatagcacccacatga |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2564923 |
agcattcatataagtagtaggttcagaatgagagtaatcagatcttgcatcattaaattggtcattaaaatcagggcctccaactatagcacccacatga |
2564824 |
T |
|
| Q |
112 |
atattaggatttggattagaggaatagaaataatctgtgtaaccatcattgcaacccactttggtctggtgaagtttgattgaagggatggaagaacctc |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2564823 |
atattaggatttggattagaggaatagaaataatctgtgtaaccatcattgcaacccactttggtctggtgaactttgattgaagggatggaagaacctc |
2564724 |
T |
|
| Q |
212 |
tgtgatgtaattgctttggatatttacttccatatcccaccatgtatgacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacac |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564723 |
tgtgatgtaattgctttggatatttacttccatatcccaccatgtatgacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacac |
2564624 |
T |
|
| Q |
312 |
attcaatttttagttataataattatgaaccaaaataataaagaaatgggcttaatgtctt-agagtcataaattagtgtacaaaatacctgtgattttg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2564623 |
attcaatttttagttataataattatgaaccaaaataataaagaaatgggctaaatgtcttaagagtcataaattagtgtacaaaatacctgtgattttg |
2564524 |
T |
|
| Q |
411 |
caaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaaaatgaatagtaccat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2564523 |
caaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatattatttttgtttaggattttggagaaaatgaatagtaccat |
2564424 |
T |
|
| Q |
511 |
ggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaatcaaatgctaattcagctcattccatca |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2564423 |
ggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataa------------taattcagctcattccatca |
2564336 |
T |
|
| Q |
611 |
ataatgaattaatgttgattgaaataagattgacctataagtaaatatat |
660 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564335 |
ataatgaattaatgttgattgaaataagattgacctataagtaaatatat |
2564286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 2574817 - 2574502
Alignment:
| Q |
12 |
agcatttatataagtagtaggttcagaatgagagtaatcagatcttgcatcattaaattggtcattaaaatcagggcctccaacaatagcacccacatga |
111 |
Q |
| |
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|||||| ||||| || |||||||| | ||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||| |
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| T |
2574817 |
agcattcatataggtggtaggttctgcatgagagtaatcagatcttgcatcattgtattggtcattagaatttggtcctccaacaatagcacccacatga |
2574718 |
T |
|
| Q |
112 |
atattaggatttggattagaggaatagaaataatctgtgtaaccatcattgcaacccactttggtctggtgaagtttgattgaagggatggaagaacctc |
211 |
Q |
| |
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|||||||||||||||||||| || ||||||| | | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2574717 |
atattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttggtctggtgaactttgattgaagggatggaagaacctc |
2574618 |
T |
|
| Q |
212 |
tgtgatgtaattgctttggatatttacttccatatcccaccatgtatgacatcttcatgggattgttacctagtatgtagtccacctatgt--tatgtac |
309 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
2574617 |
tgtgatgtaattgttttggatatttactcccatatcccaccatatatgacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtac |
2574518 |
T |
|
| Q |
310 |
acattcaatttttagt |
325 |
Q |
| |
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|||||||| ||||||| |
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|
| T |
2574517 |
acattcaacttttagt |
2574502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 396 - 583
Target Start/End: Complemental strand, 2574433 - 2574246
Alignment:
| Q |
396 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaa |
495 |
Q |
| |
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|||||||| |||||||||||||| |||| ||||||| | |||| || ||||||||| || |||||||||||||| |||||||||| |||||||||||| |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagattttggagaa |
2574334 |
T |
|
| Q |
496 |
aatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
583 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| |||||| ||| ||||||||||||| ||||||| |
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| T |
2574333 |
aatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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