View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_low_10 (Length: 262)
Name: NF2034_low_10
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 2526505 - 2526660
Alignment:
| Q |
93 |
aactgtcttcttgcttaacggaccggttaatgacagattaggttgacgttgaaaaacaacttgtccggcttgagctgtgttctcgttttccatgcgaatt |
192 |
Q |
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| T |
2526505 |
aactgtcttcttgcttaacggaccggttaacgacagattaggttgacgttgaaaaacaacttctccggcttgagctgtgttctcgttttccatgcgaatt |
2526604 |
T |
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| Q |
193 |
gattggtttgcctcaacagtccatacatttttcagaagctcgtcaaggttcatact |
248 |
Q |
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| T |
2526605 |
gattggtttgcctcaacagtccatacatttttcagaagctcgtcaaggttcatact |
2526660 |
T |
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Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 36474609 - 36474706
Alignment:
| Q |
1 |
atgcgtctcttgaacgttatcccagactcgcttgctacgctgctgccaaatactccacattaccccccaaaaaacgctgcgttctgagctgaaactgt |
98 |
Q |
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| T |
36474609 |
atgcgtctcttgaacgttatcccagactcgcttgctacgctgctgccaaatactccacattaccccccaaaaaacgctgcgttctgagctgaaactgt |
36474706 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 16811061 - 16811017
Alignment:
| Q |
205 |
tcaacagtccatacatttttcagaagctcgtcaaggttcatactg |
249 |
Q |
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| T |
16811061 |
tcaacagtccatacattttttagaagctcgtctaggttcatactg |
16811017 |
T |
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