View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2034_low_11 (Length: 257)

Name: NF2034_low_11
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2034_low_11
NF2034_low_11
[»] chr7 (12 HSPs)
chr7 (17-226)||(8544615-8544824)
chr7 (17-222)||(8580679-8580884)
chr7 (16-226)||(8569292-8569502)
chr7 (16-214)||(8383868-8384066)
chr7 (17-221)||(8575281-8575485)
chr7 (16-214)||(8608898-8609096)
chr7 (18-215)||(29578663-29578866)
chr7 (35-214)||(8589638-8589817)
chr7 (100-207)||(8601036-8601143)
chr7 (21-214)||(29582833-29583032)
chr7 (28-186)||(7878750-7878908)
chr7 (167-220)||(8537168-8537221)
[»] chr8 (1 HSPs)
chr8 (16-214)||(12527485-12527683)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 8544615 - 8544824
Alignment:
Q  17 agattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8544615 agattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgca 8544714  T
Q  117 gaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttc 216  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  8544715 gaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagcatttc 8544814  T
Q  217 ttgcttcaac 226  Q
    ||||||||||    
T  8544815 ttgcttcaac 8544824  T

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Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 8580679 - 8580884
Alignment:
Q  17 agattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgca 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8580679 agattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcattgca 8580778  T
Q  117 gaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttc 216  Q
    ||||| || ||   ||||||||||| || |||||| ||||||| ||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||     
T  8580779 gaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgtaaagataatcgtccaaagcattta 8580878  T
Q  217 ttgctt 222  Q
    ||||||    
T  8580879 ttgctt 8580884  T

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Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 8569292 - 8569502
Alignment:
Q  16 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| || ||| | | | ||||||| |||||||||||  |||||||    
T  8569292 cagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgc 8569391  T
Q  116 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcattt 215  Q
     || ||||| |||  |||||||||||| | |||||| || ||| ||| ||| | |||||||||||| || || |||||||||||||||||||||||||||    
T  8569392 tgagttgatcttctctttgtctacaggagtgagctttgagctagtactatcgttcttcattacttttcttactttgtaaagataatcatccaaagcattt 8569491  T
Q  216 cttgcttcaac 226  Q
    |||||||||||    
T  8569492 cttgcttcaac 8569502  T

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Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 8384066 - 8383868
Alignment:
Q  16 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 115  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||||||  ||||  || | |||   ||||||||||||||| ||||| ||||| ||    
T  8384066 cagattcaaagatgctctcaagctccatcagaaagtccacaaatacaaatgtttctttgtgcttgttaccatcaatcaaccttttccccttcatcatagc 8383967  T
Q  116 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 214  Q
    ||||||||| || ||||||||||  |||  |||| | ||| ||| || |||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  8383966 agaattgatctttattttgtctattgggttgagcattgaagtaacactatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcatt 8383868  T

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Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8575281 - 8575485
Alignment:
Q  17 agattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgca 116  Q
    ||||||||||||||||||||||||||| |  ||||| ||||| ||| |   ||||||||| |||||   ||| ||||| |||| |||||||||||||||     
T  8575281 agattcaaagatgctctcaagctcctttagcaagtctacaaaaacagacatatcttcctgctggttaccatcgatcaaactttctccctttatcattgct 8575380  T
Q  117 gaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatttc 216  Q
    ||||| || |||  |||||| ||||||| |||||| |||| || || |||||||||||||| ||||||| |||||| ||||||||| ||||| ||||||     
T  8575381 gaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatccttcattaatttcctcgcattgtgaagataatcgtccaatgcattta 8575480  T
Q  217 ttgct 221  Q
    |||||    
T  8575481 ttgct 8575485  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 8608898 - 8609096
Alignment:
Q  16 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 115  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||  || |  || |  |||| |||||||||  | ||||| |||||||||||    
T  8608898 cagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctttccttttatcattgc 8608997  T
Q  116 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 214  Q
    || |||||  |||||||||||   || ||  ||| ||||| ||| ||   |||||||||||||||||| ||  |||||||| |||||||||||| ||||    
T  8608998 agcattgagcttcattttgtcagtagaggtaagcatggaagtaacactcccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacatt 8609096  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 29578866 - 29578663
Alignment:
Q  18 gattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatca 111  Q
    |||||||||||| | ||||||||||| |||||||| ||||||||  |||  || |  || ||||||      ||||||||||| || ||||| || || |    
T  29578866 gattcaaagatgatttcaagctcctttaaaaagtctacaaacacgtatgtttcattgtgctggttgccatgattatcaatcaaactctttccattcataa 29578767  T
Q  112 ttgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagc 211  Q
    | ||||||| ||| |||||||||||| |||| || ||| ||||||||| ||  | ||||| ||||||||| |||   |||||||||||||| ||||||||    
T  29578766 tcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactcgttttgtaaagataatcttccaaagc 29578667  T
Q  212 attt 215  Q
    ||||    
T  29578666 attt 29578663  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 8589638 - 8589817
Alignment:
Q  35 aagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatattcattttg 134  Q
    ||||||| |||| ||||||||||||||| |||  || |   | |||||||  ||||| ||  |||| |||||||||||||||||||||||  ||| ||||    
T  8589638 aagctccctcaagaagtccacaaacacatatgtctcctttggctggttgtcgtcaattaattttttcccctttatcattgcagaattgattctcactttg 8589737  T
Q  135 tctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 214  Q
    || ||||  |  |||||||||   | ||  ||||||||||||||||||||||  | ||||||||||||||| ||||||||    
T  8589738 tcaacagaagtaagcttggaagctacactgtcatccttcattactttcctcatgtcgtaaagataatcatctaaagcatt 8589817  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 8601036 - 8601143
Alignment:
Q  100 ttccctttatcattgcagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagata 199  Q
    ||||||||||||||||||| ||||| |||||| | ||||  |  |  ||| ||||||||| || |||||||||||||||||| |||| | ||||||||||    
T  8601036 ttccctttatcattgcagagttgatcttcattctttctattgaagtaagcatggaactaacactatcatccttcattacttttctcatagtgtaaagata 8601135  T
Q  200 atcatcca 207  Q
    ||||||||    
T  8601136 atcatcca 8601143  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 29583032 - 29582833
Alignment:
Q  21 tcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttg------ttatcaatcaacctttttccctttatcattg 114  Q
    ||||||||||  | |||||||||||||||||||||||||||  |||| ||||  || ||||||      ||||||||||| |||||||| || || ||||    
T  29583032 tcaaagatgccttgaagctccttcaaaaagtccacaaacacgcatgcttctttgtgctggttgccatgattatcaatcaaactttttccgttcataattg 29582933  T
Q  115 cagaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 214  Q
    |||||||||| ||  |||||||| |||| |  | | |||||||||     | ||||| ||||||||| ||||  ||||||||||| || |||||||||||    
T  29582932 cagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactcattttgtaaagatagtcgtccaaagcatt 29582833  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 7878908 - 7878750
Alignment:
Q  28 tgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgcagaattgatatt 127  Q
    |||||||||||||| ||| |||||| ||||||||||  |  || |  |  || |||| |||||| ||  ||| ||||||||| |||||||||||||| |     
T  7878908 tgctctcaagctccctcagaaagtcgacaaacacaagcgtctcatatttctgcttgtcatcaatgaaattttctccctttataattgcagaattgatttc 7878809  T
Q  128 cattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctca 186  Q
    || ||| || ||||| | |||||| ||| |||  | |||||||||||||||||||||||    
T  7878808 caatttctcaacaggagtgagctttgaagtaacgctatcatccttcattactttcctca 7878750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 8537168 - 8537221
Alignment:
Q  167 atccttcattactttcctcacattgtaaagataatcatccaaagcatttcttgc 220  Q
    ||||||||| |||||| |||||||||| ||||| ||||||||||||||| ||||    
T  8537168 atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgc 8537221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 12527485 - 12527683
Alignment:
Q  16 cagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaacctttttccctttatcattgc 115  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||   ||||||||| ||||||||||||||||||||    
T  12527485 cagatccaaagatgctctcaagctccttcaaaaagtccaaaaacacaaatgtatcttcctgcttgtttccatcaatcaagctttttccctttatcattgc 12527584  T
Q  116 agaattgatattcattttgtctacaggggcgagcttggaactaatacaatcatccttcattactttcctcacattgtaaagataatcatccaaagcatt 214  Q
    |||||  ||    |||||||||||||| |  ||| ||||||||| ||||| ||||||||| | ||||||||||| ||||||||| ||||||||||||||    
T  12527585 agaatctatcaaaattttgtctacaggtgtcagcatggaactaacacaattatccttcatgattttcctcacatggtaaagatagtcatccaaagcatt 12527683  T

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