View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_low_19 (Length: 216)
Name: NF2034_low_19
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1141431 - 1141231
Alignment:
| Q |
1 |
ggctaaataattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnngtaaatatatgcaaaatcaattgaattgcatta |
100 |
Q |
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| T |
1141431 |
ggctaaataattctaggtatccctgaattcattacataaataattgaatatgatcaatgaaaaaaaagtaaatatatgcaaaatcaattgaattgcatta |
1141332 |
T |
|
| Q |
101 |
actttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagt |
200 |
Q |
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| T |
1141331 |
actttggtgcaaatgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagt |
1141232 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
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| |
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| T |
1141231 |
g |
1141231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 1137966 - 1137770
Alignment:
| Q |
9 |
aattctaggtatccctgaattcattacataaatcattgaatatgatcaatgnnnnnnnn----gtaaatatatgcaaaatcaattgaattgcattaactt |
104 |
Q |
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| T |
1137966 |
aattctaggtatccctgaattcattacatgaatcattgaatgtgatcaatgaagaaaaaaaaagtacatctatgcaaaatcaattgaattgcattaactt |
1137867 |
T |
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| Q |
105 |
tggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtctttccattgtactcacaagtg |
201 |
Q |
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| T |
1137866 |
tggggcaaatgtgagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgtttttccattgtactcacaagtg |
1137770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 31266268 - 31266389
Alignment:
| Q |
80 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
179 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| | |||| || ||||||||| |||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
31266268 |
aaaatcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgt |
31266367 |
T |
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| Q |
180 |
ctttccattgtactcacaagtg |
201 |
Q |
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| T |
31266368 |
ctttccattgtactcacaagtg |
31266389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 54474217 - 54474335
Alignment:
| Q |
80 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
179 |
Q |
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|||||||||||||||||||||| | | ||||| |||||| | ||||||||| | || || ||||||||||||||||||||| |||||||||||||| |
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| T |
54474217 |
aaaatcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgt |
54474316 |
T |
|
| Q |
180 |
ctttccattgtactcacaa |
198 |
Q |
| |
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| ||||||||||||||||| |
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| T |
54474317 |
ccttccattgtactcacaa |
54474335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 48323126 - 48323244
Alignment:
| Q |
80 |
aaaatcaattgaattgcattaactttggtgcaaacgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgt |
179 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | | | || | ||||||||| |||| | ||| |||||||||||||||||||||| ||| ||| |
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| T |
48323126 |
aaaatcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatgt |
48323222 |
T |
|
| Q |
180 |
ctttccattgtactcacaagtg |
201 |
Q |
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| T |
48323223 |
ccttccattgtgctcacaagtg |
48323244 |
T |
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