View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_low_2 (Length: 633)
Name: NF2034_low_2
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 617
Target Start/End: Original strand, 38997612 - 38998180
Alignment:
| Q |
11 |
atgaacaactaactaactttgtaactaacatttatatcgaatattgttccctttgcccggtgtttaacttgaccgttatgttaatgttaggcacactatg |
110 |
Q |
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| T |
38997612 |
atgaacaactaactaactttgtaactaacatttatatcgaatattgttccctttttccggtgtttaacttgaccgttatgttaatgttaggcacactatg |
38997711 |
T |
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| Q |
111 |
tggggagattggagaatggaaaagttttcgacagtagctacaatcgtggcaagccacttacatttcgcgttggtgttggagaggtatcatgattatatcc |
210 |
Q |
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| T |
38997712 |
tggggagattggagaatggaaaagttttcgacagcagctacaatcgtggcaagccacttacatttcgcgttggtgttggagaggtatcatgattatatcc |
38997811 |
T |
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| Q |
211 |
atagttttaaattgctgttacggttataatatagaccagcgagaaattgtggccttgcacacagctcaaaatcctttatattgcagatgcattaggcatt |
310 |
Q |
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| T |
38997812 |
atagttttaaattgctgtta------------------gcgagaaaatgtggccttgcacacagctcaaaatcctttatattgcagatgcattaggcatt |
38997893 |
T |
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| Q |
311 |
agccatttgttaccgcaatttaaaaccatgattctatcaataataagcactgcaattaacaaattgttttgttaataagnnnnnnnngtaaagctcttat |
410 |
Q |
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| T |
38997894 |
agccatttgttaccgcaatttaaaaccatgattctatcaataataagctctgcaattaagaaa-----------aaaag---------taaagctcttat |
38997973 |
T |
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| Q |
411 |
gagatattgattggtgaaatcataaaattgttgaatctctaccttaaagtatattttctaccttctataagttgttacttgttacaaagttcactgatat |
510 |
Q |
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| T |
38997974 |
gagatattgattggtgaaatcagaaaattgttgaatttctaccttaaagtatattttctaccttctataagttgttacttgttacaaagttcactgatat |
38998073 |
T |
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| Q |
511 |
atatgccatgctcattgttaacaaattattcatgaatcatataggttatcaaaggatgggatgtaggcattttaggagatgatggaattcctcctatgct |
610 |
Q |
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| T |
38998074 |
atatgccatgctcattgttaacaaattattcatgaatcatataggttatcaaaggatgggatgtaggcattttaggagatgatggaattcctcctatgct |
38998173 |
T |
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